Pairwise Alignments

Query, 303 a.a., protein-export membrane protein, SecD/SecF family from Pseudomonas stutzeri RCH2

Subject, 857 a.a., protein-export membrane protein SECD from Agrobacterium fabrum C58

 Score =  236 bits (601), Expect = 2e-66
 Identities = 128/302 (42%), Positives = 190/302 (62%), Gaps = 5/302 (1%)

Query: 3   RVINFMGVRHVAFALTVLLTVASLASLVVKGLNFGLDFTGGTLIELGYER-PVELEQVRG 61
           R I FM  R V F +T ++ +A +   V KGLN G+DF GG++IE+  ++   +L  +R 
Sbjct: 545 RDIPFMRYRRVVFMITGVIMLACVGGFVAKGLNLGIDFQGGSVIEVRAKQGEADLADIRE 604

Query: 62  QLVQAGFADAVVQSFGATTDVLVRMPGDDP-QLGERVASALRNADSGNSVSVKRVEFVGP 120
           +L Q    +   Q+FG+  DVL+R+   D  +  E+ A  L   +  +    +RVE VGP
Sbjct: 605 RLNQLNLGEIQAQNFGSPQDVLIRIQAQDGGENAEQSAITLVRGELEDKYDFRRVEVVGP 664

Query: 121 AVGEELRDQGGLGMLLALGGILVYVAFRFQWKFGLGAVLSLFHDVILVLGVFSFFQISFD 180
           AV  +L     +G+LLA+  I+VY+  RF+W+F LGAV+S+ HDV+  +G+F F  I F+
Sbjct: 665 AVSGDLTVTSTIGVLLAMAAIMVYIWVRFEWQFALGAVISMVHDVVFTIGLFVFLGIEFN 724

Query: 181 LTVLAAVLAVIGYSLNDTIVIFDRIRENFRMLRKAELLENINISTTQTLLRTVATSVSTL 240
           LT +AA+L +IGYSLNDT+VI+DR+REN R  +K  L   I++S  QTL RT+ T ++ L
Sbjct: 725 LTSIAAILTIIGYSLNDTVVIYDRVRENLRRYKKMPLSMIIDVSLNQTLSRTILTGLTVL 784

Query: 241 LAVGALMVFGGENLWGFSLALLIGVGAGTYSSVYVAGMLLVWLKLTRDDLIPPVVEEEVD 300
           LA+ AL +FGGE +  F+ A+L GVG G +SSVY+A  +L+  KL  D       E+E D
Sbjct: 785 LALLALYLFGGEVIRSFTFAMLFGVGIGVFSSVYIAAPVLIAFKLRPDS---KDAEDEKD 841

Query: 301 ER 302
           ++
Sbjct: 842 DK 843



 Score = 67.0 bits (162), Expect = 1e-15
 Identities = 45/197 (22%), Positives = 99/197 (50%), Gaps = 4/197 (2%)

Query: 97  VASALRNADSGNSVSVKRVEFVGPAVGEELRDQGGLGMLLALGGILVYVAFRFQWKFGLG 156
           +A  LR      +++V     VGP++G +    G     +   G+L+++ F F   FGL 
Sbjct: 341 LAVLLRAGALPATLTVVEERTVGPSLGNDSITAGLTASAIGAVGVLIFM-FVFYGFFGLL 399

Query: 157 AVLSLFHDVILVLGVFSFFQISFDLTVLAAVLAVIGYSLNDTIVIFDRIRENFRMLRKAE 216
           A ++L  +V++++ V S    +  L  +A ++  IG +++  ++I++RIRE  +  +   
Sbjct: 400 ANIALIVNVVMLIAVLSVIGSTLTLPGIAGIVLTIGMAVDSNVLIYERIREEVKSGKP-- 457

Query: 217 LLENINISTTQTLLRTVATSVSTLLAVGALMVFGGENLWGFSLALLIGVGAGTYSS-VYV 275
           L++ ++   T+     +  +++TL+    L   G   + GF++ L +G+    +++    
Sbjct: 458 LIQALDNGFTRAFATIIDANLTTLIVASVLFYMGTGPVKGFAVTLAVGIITTVFTAYTLT 517

Query: 276 AGMLLVWLKLTRDDLIP 292
           A M   W++ +R   +P
Sbjct: 518 AWMFGYWVRRSRPKHLP 534