Pairwise Alignments

Query, 540 a.a., Methyl-accepting chemotaxis protein from Pseudomonas stutzeri RCH2

Subject, 522 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  221 bits (563), Expect = 5e-62
 Identities = 125/267 (46%), Positives = 172/267 (64%)

Query: 258 LADTFTRLQQSTSNLDSASGELSAIARLMADGTREQFSRTDQVATAMHEMSATAQEVSRH 317
           L    TRLQ +   L   + +  ++A+  A+G  +Q   T+QVATA++EM+AT QEV+ +
Sbjct: 240 LKTCLTRLQDTAVQLQGQAKQADSLAQSCANGLAQQNQETEQVATAINEMAATTQEVASN 299

Query: 318 AAEAAQAADAADHSAQQGEAVMRATIATITDVSGEIASTAEVIRRLEGDSGRIGKVLEVI 377
            A AA+A   A      G  V   T   I  ++  +AST E + +L  DS  IG V++VI
Sbjct: 300 VALAAEATREASRLTIHGREVTAETRKAIQQLADSVASTGEAVNQLANDSDAIGGVVDVI 359

Query: 378 RGIADQTNLLALNAAIEAARAGDAGRGFAVVADEVRTLAQRTAESTAEIHQIIDTVQTGA 437
           + IADQTNLLALNAAIEAARAGD+GRGFAVVADEVR LAQRTAE+T EIHQ+I+ +Q  A
Sbjct: 360 KSIADQTNLLALNAAIEAARAGDSGRGFAVVADEVRQLAQRTAEATGEIHQLIEKLQLQA 419

Query: 438 SNAVRAIESGQARSEQGVGQVTEAGLMLQRITEAVEAIRDMNRQIATAAEEQTAVAEDIS 497
            +AV+  E G+ ++ +GV QV +A   L  I EA+  I DM  QIA+A EEQ+AVA++IS
Sbjct: 420 RHAVQTTEEGRVQATRGVDQVAQADQALTGINEAMGNIIDMTTQIASATEEQSAVADEIS 479

Query: 498 RNITEITSIATINQQNVERTETASQNL 524
            N++ I  +A     +   +   S++L
Sbjct: 480 NNVSTIARLADQTSGDARSSALLSEDL 506



 Score = 37.4 bits (85), Expect = 1e-06
 Identities = 45/231 (19%), Positives = 91/231 (39%), Gaps = 45/231 (19%)

Query: 137 IAADSDPLAGDAAVAGIDRATSAQLSELVKQLGDAAVQRSETIRADAQSTASLGPLIMIL 196
           +AA++   A    + G  R  +A+  + ++QL D+     E +   A  + ++G ++ ++
Sbjct: 302 LAAEATREASRLTIHG--REVTAETRKAIQQLADSVASTGEAVNQLANDSDAIGGVVDVI 359

Query: 197 ASV-----VVALFSLWLVNRR---------IIEPIRSLIEHIARLSQGKFADRVD----- 237
            S+     ++AL +     R          + + +R L +  A  + G+    ++     
Sbjct: 360 KSIADQTNLLALNAAIEAARAGDSGRGFAVVADEVRQLAQRTAEAT-GEIHQLIEKLQLQ 418

Query: 238 ---ASRADELGRLAVAANVLRDFLADTFTRLQQSTSNLDSASGELSAIARLMADGTREQF 294
              A +  E GR+     V      D   +  Q+ + ++ A G +               
Sbjct: 419 ARHAVQTTEEGRVQATRGV------DQVAQADQALTGINEAMGNI--------------I 458

Query: 295 SRTDQVATAMHEMSATAQEVSRHAAEAAQAADAADHSAQQGEAVMRATIAT 345
             T Q+A+A  E SA A E+S + +  A+ AD     A+    +     AT
Sbjct: 459 DMTTQIASATEEQSAVADEISNNVSTIARLADQTSGDARSSALLSEDLAAT 509