Pairwise Alignments

Query, 540 a.a., Methyl-accepting chemotaxis protein from Pseudomonas stutzeri RCH2

Subject, 638 a.a., putative methyl-accepting chemotaxis protein from Pseudomonas putida KT2440

 Score =  254 bits (648), Expect = 9e-72
 Identities = 154/429 (35%), Positives = 244/429 (56%), Gaps = 18/429 (4%)

Query: 127 VAYRKGLDAYIAADSDPLAGDAAVA-----------GIDRATSAQLSELVKQLGDAAVQR 175
           +A  + L A + A+      DAA A           G  +  S Q  + + + G   +Q 
Sbjct: 207 LAELRALPAKVPAEHAASLDDAATAMGGYRDAVTQFGNAQLASEQALQRMVEQGTVLLQA 266

Query: 176 SETIRADA----QSTASLGPLIMILASVV---VALFSLWLVNRRIIEPIRSLIEHIARLS 228
           S+ + A       + A+    ++ +A+V+   + L + W + R+II P+R  +    R++
Sbjct: 267 SQMMTASQTEVRDAAAAQAKTLLTVATVLALALGLLAAWAITRQIIIPLRQTLRAAERVA 326

Query: 229 QGKFADRVDASRADELGRLAVAANVLRDFLADTFTRLQQSTSNLDSASGELSAIARLMAD 288
            G     +   R DELG+L  + + +   L +    +    + + SA+ ELSA+    + 
Sbjct: 327 SGDLTQSLQVQRRDELGQLQASMHRMTQGLRELIGGIGDGVTQIASAAEELSAVTEQTSA 386

Query: 289 GTREQFSRTDQVATAMHEMSATAQEVSRHAAEAAQAADAADHSAQQGEAVMRATIATITD 348
           G   Q   TDQVATAM++M+AT  EV+R+A +A++AA  AD  A++G+ V+   +A I  
Sbjct: 387 GVNNQKVETDQVATAMNQMTATVHEVARNAEQASEAALMADQQAREGDRVVGEAVAQIER 446

Query: 349 VSGEIASTAEVIRRLEGDSGRIGKVLEVIRGIADQTNLLALNAAIEAARAGDAGRGFAVV 408
           ++ E+ +++E +  L+ +S +IG VL+VI+ +A QTNLLALNAAIEAARAG+AGRGFAVV
Sbjct: 447 LASEVVNSSEAMNLLKTESDKIGSVLDVIKSVAQQTNLLALNAAIEAARAGEAGRGFAVV 506

Query: 409 ADEVRTLAQRTAESTAEIHQIIDTVQTGASNAVRAIESGQARSEQGVGQVTEAGLMLQRI 468
           ADEVR+LAQRT +ST EI ++I  +Q+G       +++ +  ++  V     AG  L+ I
Sbjct: 507 ADEVRSLAQRTQQSTEEIEELIAGLQSGTQRVASVMDNSRQLTDSSVELTRRAGSSLETI 566

Query: 469 TEAVEAIRDMNRQIATAAEEQTAVAEDISRNITEITSIATINQQNVERTETASQNLHGLS 528
           T  V +I+ MN+QIATAAEEQTAVAE+I+R++  +  I+       E T ++S  L  L 
Sbjct: 567 TRTVSSIQAMNQQIATAAEEQTAVAEEINRSVMNVRDISDQTSAASEETASSSVELARLG 626

Query: 529 AQLTEVTQR 537
             L  +  R
Sbjct: 627 THLQGLVGR 635



 Score = 35.8 bits (81), Expect = 5e-06
 Identities = 51/223 (22%), Positives = 97/223 (43%), Gaps = 43/223 (19%)

Query: 350 SGEIASTAEVIRR-----LEGDSGRIGKVL-EVIRGIADQTNLLA-----LNAAIEAARA 398
           SG++  + +V RR     L+    R+ + L E+I GI D    +A     L+A  E   A
Sbjct: 327 SGDLTQSLQVQRRDELGQLQASMHRMTQGLRELIGGIGDGVTQIASAAEELSAVTEQTSA 386

Query: 399 GDAGRGFAVVADEVRTLAQRTAESTAEIHQIIDTVQTGASNAVRAIESGQARSEQGVGQV 458
           G   +   V  D+V T      + TA +H++    +  +  A+ A +  QAR  +G   V
Sbjct: 387 GVNNQ--KVETDQVATAMN---QMTATVHEVARNAEQASEAALMADQ--QAR--EGDRVV 437

Query: 459 TEAGLMLQRITEAVEAIRDMNRQIATAAEEQTAVAEDISRNITEITSIATIN-------- 510
            EA   ++R+   V    +    + T +++  +V  D+ +++ + T++  +N        
Sbjct: 438 GEAVAQIERLASEVVNSSEAMNLLKTESDKIGSVL-DVIKSVAQQTNLLALNAAIEAARA 496

Query: 511 --------------QQNVERTETASQNLHGLSAQLTEVTQRLA 539
                         +   +RT+ +++ +  L A L   TQR+A
Sbjct: 497 GEAGRGFAVVADEVRSLAQRTQQSTEEIEELIAGLQSGTQRVA 539