Pairwise Alignments

Query, 540 a.a., Methyl-accepting chemotaxis protein from Pseudomonas stutzeri RCH2

Subject, 521 a.a., putative aerotaxis receptor from Pseudomonas putida KT2440

 Score =  222 bits (565), Expect = 3e-62
 Identities = 125/275 (45%), Positives = 170/275 (61%)

Query: 263 TRLQQSTSNLDSASGELSAIARLMADGTREQFSRTDQVATAMHEMSATAQEVSRHAAEAA 322
           TRLQ S  +L   + +  A+A   + G   Q   T+QVA A+++M+AT QEV+ H    A
Sbjct: 244 TRLQDSAEHLSDQARQSDALAHKSSTGLERQRVETEQVAAAVNQMAATTQEVANHVQRTA 303

Query: 323 QAADAADHSAQQGEAVMRATIATITDVSGEIASTAEVIRRLEGDSGRIGKVLEVIRGIAD 382
            A   A+    QG  +   T   I  +S  +  T + + +L  DS  IG V++VI+GIAD
Sbjct: 304 DATQEANRLTSQGRQIAGETREAIERLSAAVGETGQTVTQLAKDSDEIGGVVDVIKGIAD 363

Query: 383 QTNLLALNAAIEAARAGDAGRGFAVVADEVRTLAQRTAESTAEIHQIIDTVQTGASNAVR 442
           QTNLLALNAAIEAARAG+ GRGFAVVADEVR LAQRTAEST +IH +I  +Q  ASNAV 
Sbjct: 364 QTNLLALNAAIEAARAGEMGRGFAVVADEVRQLAQRTAESTGQIHGLIAKLQQTASNAVL 423

Query: 443 AIESGQARSEQGVGQVTEAGLMLQRITEAVEAIRDMNRQIATAAEEQTAVAEDISRNITE 502
            +E+G  ++++GV +V +A   L  I+EAV  I DM  QIA A EEQTAVA++ISRNI+ 
Sbjct: 424 TMETGHRQAQEGVDRVMQADEALVGISEAVANITDMATQIAAATEEQTAVADEISRNIST 483

Query: 503 ITSIATINQQNVERTETASQNLHGLSAQLTEVTQR 537
           I  +A    +  + +   S+ L   +     + +R
Sbjct: 484 IAELADQTAEQAQHSALLSEELTSTAGSQYSLVER 518



 Score = 40.4 bits (93), Expect = 2e-07
 Identities = 60/267 (22%), Positives = 114/267 (42%), Gaps = 34/267 (12%)

Query: 138 AADSDPLAGDAAVAGIDR--ATSAQLSELVKQLGDAAVQRSETIRADAQSTASLGPLIMI 195
           A  SD LA  ++  G++R    + Q++  V Q+     + +  ++  A +T     L   
Sbjct: 257 ARQSDALAHKSST-GLERQRVETEQVAAAVNQMAATTQEVANHVQRTADATQEANRLTS- 314

Query: 196 LASVVVALFSLWLVNRRIIEPIRSLIEHIARLSQGKFADRVD--ASRADELGRLAVAANV 253
                          R+I    R  IE ++  + G+    V   A  +DE+G +    +V
Sbjct: 315 -------------QGRQIAGETREAIERLSA-AVGETGQTVTQLAKDSDEIGGVV---DV 357

Query: 254 LRDFLADTFTRLQQSTSNLDSASGELSAIARLMADGTREQFSRTDQVATAMHEMSATAQE 313
           ++  +AD    L  + +   + +GE+     ++AD  R+   RT +    +H + A  Q+
Sbjct: 358 IKG-IADQTNLLALNAAIEAARAGEMGRGFAVVADEVRQLAQRTAESTGQIHGLIAKLQQ 416

Query: 314 VSRHAAEA-----AQAADAADHSAQQGEAV--MRATIATITDVSGEIASTAEVIRRLEGD 366
            + +A         QA +  D   Q  EA+  +   +A ITD++ +IA+  E        
Sbjct: 417 TASNAVLTMETGHRQAQEGVDRVMQADEALVGISEAVANITDMATQIAAATE---EQTAV 473

Query: 367 SGRIGKVLEVIRGIADQTNLLALNAAI 393
           +  I + +  I  +ADQT   A ++A+
Sbjct: 474 ADEISRNISTIAELADQTAEQAQHSAL 500