Pairwise Alignments

Query, 540 a.a., Methyl-accepting chemotaxis protein from Pseudomonas stutzeri RCH2

Subject, 541 a.a., Methyl-accepting chemotaxis transducer from Pseudomonas putida KT2440

 Score =  242 bits (617), Expect = 3e-68
 Identities = 175/541 (32%), Positives = 286/541 (52%), Gaps = 29/541 (5%)

Query: 12  ALIGGSLLLTVLIALACIRLLS-SNIDNFQALLDG-PLEELQLVDEAN-LEFKVQVQEWK 68
           AL+G +L+  +++ L    L+   NI      ++   +  ++++DE   L  +++   ++
Sbjct: 12  ALLGFALIGLLMLGLGIFSLVQMGNIRQAGVAIEQVSVPSIKILDELTALNLRMRTLSYR 71

Query: 69  NVLLRGKQPDSRNRYWSQFEGQEAKVQKILGDLL--VLTADEP-------ELAKQIESLR 119
             LL  ++P ++       + + +++ +     L  ++ ADE        +L  Q   L 
Sbjct: 72  --LLLNREPATQRDTLDMLDQRNSQIDRARQAYLPMIVAADEQAAFDQYGQLLNQYRQLE 129

Query: 120 SEHRTLGVAYRKGLDAYIAADSDPLAGDAAVAGIDRATSAQLSELVKQLG--DAAVQRSE 177
           S  RTL  A R  LD       D L  D        A S Q+++++  L   +    R+ 
Sbjct: 130 SRMRTLSQADR--LDEL----RDLLNRDLL------ANSEQINKVMDTLVRINTDQTRAT 177

Query: 178 TIRADAQSTASLGPLIMILASVVVALFSL-WLVNRRIIEPIRSLIEHIARLSQGKFADRV 236
             +A  Q   +   +I +L +  V  F+  +L+ R I++PI   ++   +++ G     +
Sbjct: 178 NEKAANQYAGAFALVIGLLVAATVLTFACAFLLTRSIVKPIEEALKCAEQVADGDLTHVI 237

Query: 237 DASRADELGRLAVAANVLRDFLADTFTRLQQSTSNLDSASGELSAIARLMADGTREQFSR 296
            A   DE  RL  A   ++D L DT  ++  S + L SA+ EL+A+    A G ++Q + 
Sbjct: 238 RAEGTDEAARLLRAMARMQDKLRDTLQQIAGSATQLASAAEELNAVTDESARGLQQQNNE 297

Query: 297 TDQVATAMHEMSATAQEVSRHAAEAAQAADAADHSAQQGEAVMRATIATITDVSGEIAST 356
            +Q ATA+ EM++  +EV+R+A   ++A+  A  S   G  ++  T+  I  +SG++ +T
Sbjct: 298 IEQAATAVTEMTSAVEEVARNAVSTSEASSEASRSTGDGRDLVMETVGAIERMSGDVQAT 357

Query: 357 AEVIRRLEGDSGRIGKVLEVIRGIADQTNLLALNAAIEAARAGDAGRGFAVVADEVRTLA 416
           A++I  L   S  IGKVL+VIRG+ADQTNLLALNAAIEAARAG+AGRGFAVVADEVR LA
Sbjct: 358 AKLITHLAEQSRDIGKVLDVIRGLADQTNLLALNAAIEAARAGEAGRGFAVVADEVRALA 417

Query: 417 QRTAESTAEIHQIIDTVQTGASNAVRAIESGQARSEQGVGQVTEAGLMLQRITEAVEAIR 476
            RT +ST+EI ++I ++Q G   AV ++ +   R+E  +     AG+ L  I  AV  I 
Sbjct: 418 HRTQQSTSEIERMIGSIQGGTEEAVESMRTSTERAESTLNIARGAGMALDTIAGAVAQIN 477

Query: 477 DMNRQIATAAEEQTAVAEDISRNITEITSIATINQQNVERTETASQNLHGLSAQLTEVTQ 536
           + N  IA+AAEEQ  VA ++ RN+  I  ++  +     +T  AS  L  L+  L  +  
Sbjct: 478 ERNLVIASAAEEQAQVAREVDRNLVNINDLSVQSATGAHQTSAASAELSRLAVDLNGLVA 537

Query: 537 R 537
           R
Sbjct: 538 R 538



 Score = 38.9 bits (89), Expect = 5e-07
 Identities = 74/369 (20%), Positives = 135/369 (36%), Gaps = 32/369 (8%)

Query: 8   AQILALIGGSLLLTVLIALACIRLLSSNIDNFQALLDGPLEELQLVDEANLEFKVQVQEW 67
           A   AL+ G L+   ++  AC  LL+ +I         P+EE        L+   QV + 
Sbjct: 186 AGAFALVIGLLVAATVLTFACAFLLTRSIVK-------PIEEA-------LKCAEQVADG 231

Query: 68  K-NVLLRGKQPDSRNRYWSQFEGQEAKVQKILGDLLVLTADEPELAKQIESLRSEHRTLG 126
               ++R +  D   R        + K++  L  +          A+++ ++  E     
Sbjct: 232 DLTHVIRAEGTDEAARLLRAMARMQDKLRDTLQQIAGSATQLASAAEELNAVTDESARGL 291

Query: 127 VAYRKGLDAYIAADSDPLAGDAAVAGIDRATSAQLSELVKQLGDAAVQRSETIRADAQST 186
                 ++    A ++  +    VA    +TS   SE  +  GD      ET+ A  + +
Sbjct: 292 QQQNNEIEQAATAVTEMTSAVEEVARNAVSTSEASSEASRSTGDGRDLVMETVGAIERMS 351

Query: 187 ASLGPLIMILASVVVALFSLWLVNRRIIEPIRSLIEHIARLSQGKFADRVDASRADELGR 246
                 +   A ++  L        ++++ IR L +    L+       ++A+RA E GR
Sbjct: 352 GD----VQATAKLITHLAEQSRDIGKVLDVIRGLADQTNLLALNA---AIEAARAGEAGR 404

Query: 247 -LAVAANVLRDFLADTFTRLQQSTSNLDSASGELSAIARLMADGTREQFSRTDQVATAMH 305
             AV A+ +R        R QQSTS ++   G +        +  R    R +       
Sbjct: 405 GFAVVADEVRALA----HRTQQSTSEIERMIGSIQGGTEEAVESMRTSTERAESTLNIAR 460

Query: 306 EMSATAQEVSRHAAEAAQ----AADAADHSAQQGEAVMRATIATITDVSGEIASTAEVIR 361
                   ++   A+  +     A AA+  AQ    V R  +  I D+S + A+ A    
Sbjct: 461 GAGMALDTIAGAVAQINERNLVIASAAEEQAQVAREVDR-NLVNINDLSVQSATGAHQTS 519

Query: 362 RLEGDSGRI 370
               +  R+
Sbjct: 520 AASAELSRL 528