Pairwise Alignments

Query, 671 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

Subject, 984 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  144 bits (362), Expect = 3e-38
 Identities = 134/513 (26%), Positives = 229/513 (44%), Gaps = 67/513 (13%)

Query: 178 LVARQIRQLITRPIRDLEALSRQVTREEDYSLRAKPGNQDE-----IGRLADAFNTMLSR 232
           L+A   ++  T+  + L A + Q  RE + +LR      DE     + RL D     LS 
Sbjct: 520 LMAASPQEFATQLAKPLGAKTAQ--REVEQALRDLQLPFDEHRPYALRRLRDRIEANLSG 577

Query: 233 MEAREQQLKRARDDAQEAFDHAQG----LAEETRHSNRKLELEVQVRSKIEQKLTGFQKY 288
           +         A+D  +    +  G    + E+      +LE      + +  +L   ++Y
Sbjct: 578 LMGPSV----AQDIVENFLPYKNGAEGYITEDIHFIESRLEEYHSRLTGLAAELDALRRY 633

Query: 289 LNSIIDSMPSALIALDEQLYVTQWNQEASALSGTPLDDALNQPVFVAFEPLKPFLAQIRR 348
               +  +P  + +L +   +  WN+    L+  P    +   +    EP +  L+    
Sbjct: 634 HRQTLQELPMGVCSLAKDQEILMWNRALEELTEIPALQVVGSRLSTIAEPWRSLLSDFIE 693

Query: 349 TSEQHVVAKIERVTWLRNDEPHHYALTCYPLTGAGGRGVVIRIDDITQRINMEEMMVQSE 408
            +++H+  +       R     H A    PL   G  G+V+ ++D+T+   +E+ +V SE
Sbjct: 694 QADEHLHKQRLAHNGHRRCLNLHKAAIAEPLA-PGNSGLVLLVEDLTETQQLEDRLVHSE 752

Query: 409 KMLSVGSLAAGMAHEINNPLGAILHNAQNIRRRLSPELERNREAAEETGVRLEAVNQYLQ 468
           ++ S+G LAAG+AHEI NP+  I   AQN+R           +  E+ G  +E   Q ++
Sbjct: 753 RLASIGRLAAGVAHEIGNPITGIACLAQNLR-----------DEREDDGEIVEISAQIIE 801

Query: 469 RREVPQLLDGIQQAGSRAAKIVSHMLSFSRMSNRQLADCHLPVLIDQALEIAGNDFAL-- 526
           + +             R ++IV  ++SF+    RQ      PV + Q  + A    +L  
Sbjct: 802 QTK-------------RVSRIVQSLMSFAHAGERQHQ--LYPVSLAQVTQDAIGLLSLNR 846

Query: 527 ----MEGFDFKAIDIVRDFDPRVDRVPCIGNELEQVLLNLLKNAAQAIHAHQVGEPGQII 582
               ++  +    D V + DP+          L QVL+NLL NA  A       + G I 
Sbjct: 847 NRTEVQFINLCHPDHVAEGDPQ---------RLAQVLINLLSNARDASP-----QGGVIR 892

Query: 583 LRTRLNPPWAEIQVEDNGGGIPENVRKRIFEPFFTTKEVGQGTGLGLSVSYFIITNNHQG 642
           + + +      + VED G GIP++++ R+FEPFFTTK+ G+GTGLGL++ Y II   H G
Sbjct: 893 ISSEVAEQTVYLVVEDEGSGIPKDIQDRLFEPFFTTKDPGEGTGLGLALVYSII-EEHYG 951

Query: 643 QMEVQC----QPGHGTTFTLRLPLNSPAEPAAT 671
           Q+++      +   GT F + LP +  A  A +
Sbjct: 952 QIDIDSPADPETQRGTRFRITLPRHVEASHAVS 984