Pairwise Alignments

Query, 403 a.a., Integrase from Pseudomonas stutzeri RCH2

Subject, 409 a.a., integrase arm-type DNA-binding domain-containing protein from Rhodanobacter sp000427505 FW510-R12

 Score =  228 bits (581), Expect = 2e-64
 Identities = 141/411 (34%), Positives = 214/411 (52%), Gaps = 22/411 (5%)

Query: 6   LTDAKVKSVKPADRDWKLSDGGGLFLLVKPAGGKLWRWKYRLQGKENLFAIGSFPQVSLA 65
           L+DA V+  KP+D+  +L DGGGL+L V P+GGK WR KYR  GKE   ++G++P   LA
Sbjct: 3   LSDATVRKAKPSDKPQRLFDGGGLYLEVAPSGGKWWRLKYRFGGKEKRLSLGTYPDTGLA 62

Query: 66  EARTAREKARALVKQGIHPAHERQQVKQRNLEALAERKRAQESSFAKVAQAYLAEIKPVF 125
           +AR  R+ AR L+ QG+ P  +R+  K   ++  A       +SF  VA+ +LA  KP +
Sbjct: 63  DARERRDAARKLLAQGVDPGVQRKAEKAAGVDRAA-------NSFEVVAREWLAVKKPEW 115

Query: 126 AHSSYRTKESRIRKYLSPKFDGMPMSDIGVKQIRPLLEECKAHGAWAAIH-VKGDLSAIF 184
               +  +  R+  +  P+   +P++DIGV +IRPL       G     H ++  LS +F
Sbjct: 116 TAGQFAKECGRLENHAFPRIGALPVADIGVGEIRPLFAYLIKQGHIEQAHRLRHQLSRVF 175

Query: 185 EFAVVRGLVEANPIPSLRGLLRVPASESKAAMT-REQIQKFYQALRGYRGYPETALCLRL 243
            FAV       +P   LR  L     ++   +T  E++ +  +A+ G+ G       L+L
Sbjct: 176 RFAVATERASRDPAADLRDTLPSRNPQNHPTITDPERVGELMRAIDGFTGTLPVQCALKL 235

Query: 244 IALTACRPGEAADAEWEEFDFE-----------DAVWRRPAAKMKARREHVSPLSAQAIA 292
             L  CRPGE   AEW  FD +           +   ++ A +  +   H+ PLS QA+ 
Sbjct: 236 APLWFCRPGEIRMAEWTHFDLDGEHPSYTVPPMNRKLKKAAKENPSTPPHIVPLSRQALE 295

Query: 293 VLKDLQRITGGGRYLFP-HRSGKGFTTPNRLTYAMRDMNLGRGTTPHCWRTTFSTWANEN 351
           +L++L+++TG GRYLFP  R  K   +   +  A+  +      T H +R    T   E 
Sbjct: 296 ILRELRQLTGHGRYLFPGARDPKRHMSDGAVNAALARIGYKGIITGHGFRHMARTLLGEL 355

Query: 352 GFRPDAIERQLAHVESNKVRATYNKALLLDQRRSLLQAWAGYLSAAEHSDT 402
           G+ P+A+ERQL+H E   V   YNKA  L +RR ++QAWA YL +     T
Sbjct: 356 GWNPEALERQLSHKEPG-VAGVYNKAQHLPERRKVMQAWADYLDSLRAGST 405