Pairwise Alignments

Query, 403 a.a., Integrase from Pseudomonas stutzeri RCH2

Subject, 391 a.a., Integrase from Pseudomonas stutzeri RCH2

 Score =  221 bits (563), Expect = 3e-62
 Identities = 129/391 (32%), Positives = 206/391 (52%), Gaps = 9/391 (2%)

Query: 6   LTDAKVKSVKPADRDWKLSDGGGLFLLVKPAGGKLWRWKYRLQGKENLFAIGSFPQVSLA 65
           LT  +VKS  P   D+ L+DGGGLFL ++ AGGK WR+++RL GK++  ++G+  +V+LA
Sbjct: 3   LTALQVKSAAPRKSDYGLADGGGLFLWIRAAGGKSWRFRFRLDGKQSHISLGTIDKVTLA 62

Query: 66  EARTAREKARALVKQGIHPAHERQQVKQRNLEALAERKRAQESSFAKVAQAYLAEIKPVF 125
           +AR     AR LV QG HP  ER+ ++       A+   ++ ++F  +A  +     P +
Sbjct: 63  QARQLASDARQLVAQGRHPGLERKVMR-------AQAAMSRANTFKSLALEWHQHKAPRW 115

Query: 126 AHSSYRTKESRIRKYLSPKFDGMPMSDIGVKQIRPLLEECKAHGAWAAIH-VKGDLSAIF 184
           +              + P+   +P++DI   Q   +    ++ GA   +  V+     ++
Sbjct: 116 SVGYAGDVVEAFELDVFPQVGSLPLTDIKPMQWLQVFRRIESRGALEKLRKVRQRCQEVY 175

Query: 185 EFAVVRGLVEANPIPSLRGLLRVPASESKAAMTREQIQKFYQALRGYRGYPETALCLRLI 244
            FA+  G  E NPI  + G L+ P S     +   +I    ++++   G+    +  RL+
Sbjct: 176 RFAIATGRAEYNPIADIGGALQTPTSRHYPFLPIAEIPALIRSIQACPGHDVVKIATRLL 235

Query: 245 ALTACRPGEAADAEWEEFDFEDAVWRRPAAKMKARREHVSPLSAQAIAVLKDLQRITGGG 304
            LT  R  E     W EFD + A+W  PAA+MK RR H+ PLS QA+AVL++L+RITGG 
Sbjct: 236 ILTGVRTAELRGVPWSEFDLDKALWLIPAARMKMRRAHLVPLSQQAVAVLRELERITGGY 295

Query: 305 RYLFPHRSGKGF-TTPNRLTYAMRDMNLGRGTTPHCWRTTFSTWANENGFRPDAIERQLA 363
              FP R+      +   +   ++        T H +R T ST  +E G+  + +E QLA
Sbjct: 296 TLAFPGRNDPAKPMSEAAINQLLKRSGYDGRATGHGFRHTMSTTLHEQGYPSEWVETQLA 355

Query: 364 HVESNKVRATYNKALLLDQRRSLLQAWAGYL 394
           HV+ N +R TYN A  L+ RR +LQ +A ++
Sbjct: 356 HVDKNSIRGTYNHAQYLEGRREMLQWYANHV 386