Pairwise Alignments

Query, 403 a.a., Integrase from Pseudomonas stutzeri RCH2

Subject, 418 a.a., Prophage integrase IntA from Xanthobacter sp. DMC5

 Score =  141 bits (356), Expect = 3e-38
 Identities = 120/412 (29%), Positives = 179/412 (43%), Gaps = 44/412 (10%)

Query: 4   NLLTDAKVKSVKPADRDWKLSDGGGLFLLVKPAGGKLWRWKYRLQGKENLFAIGSFPQVS 63
           N LT   V S+K   R     DGG L+L + P G K W + ++  GK     +GS   V+
Sbjct: 6   NRLTARTVASLKDPGR---YPDGGNLYLQIGPTGSKAWLFMFKRDGKRREMGLGSLNDVT 62

Query: 64  LAEARTAREKARALVKQGIHPAHERQQVKQRNLEALAERKRAQES-SFAKVAQAYLAEIK 122
           LA AR   ++AR +V  G  P   R+        ALA RK  + + +F   A A + ++ 
Sbjct: 63  LAAARLKADEARRIVADGGDPFAVREA-------ALAVRKEVEAAPTFGAFADALITKLA 115

Query: 123 PVFAHSSYRTK-ESRIRKYLSPKFDGMPMSDIGVKQIRPLLEECKAHGAWAAIHVKGDLS 181
             F +  +  + +  +          M ++DI    I  +LE         A  ++G + 
Sbjct: 116 HGFRNEKHVAQWQMTLGPTYCTAIRDMKIADITAVDILKVLEPIWQDKNETASRLRGRIE 175

Query: 182 AIFEFAVVRGLVEANPIPSLRGLLRVPASESK-------AAMTREQIQKFYQALRGYRGY 234
            + + A V GL         +G L+   S+ +       AA+   ++  F  ALR  +  
Sbjct: 176 RVLDAAKVEGLRSGENPAQWKGNLQHRLSKRQKLQRGHHAALPYAEVPAFIVALRARQAI 235

Query: 235 PETALCLRLIALTACRPGEAADAEWEEFDFEDAVWRRPAAKMKARREHVSPLSAQAIAVL 294
              A  L    LTA R GE   A W E DF+ AVW  PA +MKA REH  PLS  A++VL
Sbjct: 236 --AARALEFAILTAARSGEVLGATWAEIDFKAAVWTVPATRMKAGREHRVPLSDAAVSVL 293

Query: 295 KDLQRITGGGRYLFPHRSG---------KGFTTPNRLTYAMRDMNLGRGT---TPHCWRT 342
           ++ +          PHR G          G      L+    +M L R     T H +R+
Sbjct: 294 REAE----------PHRRGDDPETAFVFPGLRPMRPLSTMAMEMLLRRQKQVFTVHGFRS 343

Query: 343 TFSTW-ANENGFRPDAIERQLAHVESNKVRATYNKALLLDQRRSLLQAWAGY 393
           +F  W A E  F  +  E  LAHV  +     Y +   L++RR ++ AWA +
Sbjct: 344 SFRDWAAEETSFPREIAEAALAHVVGDATERAYRRGDALEKRRDMMTAWATF 395