Pairwise Alignments

Query, 403 a.a., Integrase from Pseudomonas stutzeri RCH2

Subject, 403 a.a., Prophage integrase IntA from Xanthobacter sp. DMC5

 Score =  136 bits (342), Expect = 1e-36
 Identities = 102/393 (25%), Positives = 175/393 (44%), Gaps = 24/393 (6%)

Query: 12  KSVKPADRDWKLSDGGGLFLLVKPAGGKLWRWKYRLQGKENLFAIGSFPQVSLAEARTAR 71
           ++V    +  + +DGG L+L +   GG+ W + YR  GK+    +GS   VSLA AR   
Sbjct: 11  RTVATLTKPGRHADGGNLYLSISTNGGRRWIFLYRWAGKQLEMGLGSARDVSLARARELA 70

Query: 72  EKARALVKQGIHPAHERQQVKQRNLEALAERKRAQESSFAKVAQAYLAEIKPVFAHSSYR 131
           + ARA + +G++P   R+             +R    +F + A   + +I+  F +  +R
Sbjct: 71  DAARAQLAEGVNPLDARRA------------ERVVIPTFGEFADGLVQDIQSGFRNEKHR 118

Query: 132 TKESRIRKYLSPKFDGMPMSDIGVKQIRPLLEECKAHGAWAAIHVKGDLSAIFEFAVVRG 191
            +     +  +     + +  +  + +  +L+         A  ++G +  + + A  +G
Sbjct: 119 WQWQHTLEVYAAALRPIQIDSVTTEDVLGILQPLWQTKQETASRLRGRIERVLDAAKAKG 178

Query: 192 LVEANPIPSLRGLLRVPASESKA-------AMTREQIQKFYQALRGYRGYPETALCLRLI 244
           L   +     RG L     + +        A+    +  F   L+  R     AL L   
Sbjct: 179 LRAGDNPARWRGHLDALLPKRQKLQRGHHPALPHASVPAFVAELQKRRA--TAALALEFA 236

Query: 245 ALTACRPGEAADAEWEEFDFEDAVWRRPAAKMKARREHVSPLSAQAIAVLKDLQRITGGG 304
            LTA R GE   A W E D +  +W  PA +MKA +EH  PLS +A+ +L +       G
Sbjct: 237 ILTAARSGEVLGATWVEIDRKAKIWTVPAVRMKAGKEHRVPLSDRALEILDEAAAQRTDG 296

Query: 305 RYLFP-HRSGKGFTTPNRLTYAMRDMNLGRGTTPHCWRTTFSTWANE-NGFRPDAIERQL 362
            ++FP  R GK  +    +   +R        T H +R++F  WA E   F  +  E  L
Sbjct: 297 GFVFPGPRKGKPLSN-MAMAMLLRVRMKRPEITVHGFRSSFRDWAGECTSFPREVAEAAL 355

Query: 363 AHVESNKVRATYNKALLLDQRRSLLQAWAGYLS 395
           AH   ++V   Y +A  L++RR L++AWA Y++
Sbjct: 356 AHTVGDEVERAYRRADALEKRRKLMEAWAKYVT 388