Pairwise Alignments

Query, 403 a.a., Integrase from Pseudomonas stutzeri RCH2

Subject, 411 a.a., Prophage integrase IntA from Xanthobacter sp. DMC5

 Score =  145 bits (367), Expect = 2e-39
 Identities = 127/417 (30%), Positives = 184/417 (44%), Gaps = 36/417 (8%)

Query: 4   NLLTDAKVKSVKPADRDWKLSDGGGLFLLVKPAGGKLWRWKYRLQGKENLFAIGSFPQVS 63
           N LT   V S+K   R     DGG L+L + P G K W + ++  GK     +GS   V+
Sbjct: 6   NRLTARTVASLKDPGR---YPDGGNLYLQIGPTGSKAWLFMFKRDGKRREMGLGSLNDVT 62

Query: 64  LAEARTAREKARALVKQGIHPAHERQQVKQRNLEALAERKRAQES-SFAKVAQAYLAEIK 122
           LA AR   ++AR +V  G  P   R+        ALA RK A+ + +F   A A + ++ 
Sbjct: 63  LAAARMKADEARRIVADGGDPFAVREA-------ALAVRKEAEAAPTFGAFADALITKLA 115

Query: 123 PVFAHSSYRTK-ESRIRKYLSPKFDGMPMSDIGVKQIRPLLEECKAHGAWAAIHVKGDLS 181
             F +  +  + +  +          M ++DI    I  +LE         A  ++G + 
Sbjct: 116 HGFRNEKHVAQWQMTLGPTYCSAIRDMKIADITAVDILKVLEPIWQDKNETASRLRGRIE 175

Query: 182 AIFEFAVVRGLVEANPIPSLRGLLRVPASESK-------AAMTREQIQKFYQALRGYRGY 234
            + + A V GL         +G L+   S+ +       AA+   ++  F  ALR     
Sbjct: 176 RVLDAAKVEGLRTGENPAQWKGNLQHRLSKRQKLQRGHHAALPYAEVPAFIVALRARPAM 235

Query: 235 PETALCLRLIALTACRPGEAADAEWEEFDFEDAVWRRPAAKMKARREHVSPLSAQAIAVL 294
              A  L    LTA R GE   A W E DF+ AVW  PA +MKA REH  PLS  AIAVL
Sbjct: 236 --AARALEFAILTAARSGEVLSATWAEIDFKAAVWTVPATRMKAGREHRVPLSDAAIAVL 293

Query: 295 KDLQRITGGG----RYLFPHRSGKGFTTPNRLTYAMRDMNLGRGT---TPHCWRTTFSTW 347
           ++ +    G      +LFP     G      L+    +M L R     T H +R++F  W
Sbjct: 294 REAEPHRRGDDPETAFLFP-----GLRPMRPLSTMAMEMLLRRQKQVFTVHGFRSSFRDW 348

Query: 348 -ANENGFRPDAIERQLAHVESNKVRATYNKALLLDQRRSLLQAWAGYLSA--AEHSD 401
            A E  F  +  E  LAHV  +     Y +   L++RR L+ AWA + +   AE  D
Sbjct: 349 AAEETSFPREIAEAALAHVVGDATERAYRRGDALEKRRDLMTAWATFCTTEPAEQKD 405