Pairwise Alignments

Query, 403 a.a., Integrase from Pseudomonas stutzeri RCH2

Subject, 418 a.a., integrase from Pseudomonas simiae WCS417

 Score =  196 bits (497), Expect = 1e-54
 Identities = 127/401 (31%), Positives = 205/401 (51%), Gaps = 21/401 (5%)

Query: 6   LTDAKVKSVKPADRDWKLSDGGGLFLLVKPAGGKLWRWKYRLQGKENLF--AIGSFPQVS 63
           L+D ++K VKPA +D+ L+DG GL L V+  G  LW + YR    +N     +G++P++S
Sbjct: 8   LSDRQLKGVKPASKDYVLTDGDGLQLRVRSNGSLLWNFNYREPVTKNRINMGLGTYPELS 67

Query: 64  LAEARTAREKARALVKQGIHPAHERQQVKQRNLEALAERKRAQ-ESSFAKVAQAYLA--- 119
           LA AR    +AR L+ QGI P  +R        + L E KRA+ E +F  VA A+     
Sbjct: 68  LANARKMAVQARELLAQGIDPKVQR--------DTLNEAKRAETEHTFENVATAWFDLKK 119

Query: 120 -EIKPVFAHSSYRTKESRIRKYLSPKFDGMPMSDIGVKQIRPLLEECKAHGAWAAI-HVK 177
             + P +A   +R+    +  ++ P     P++ I    +  LL   +A G+   +  + 
Sbjct: 120 DSVTPAYAEDIWRS----LTLHVFPDLKTTPLAKITAPMVIELLRPIEAKGSLETVKRLS 175

Query: 178 GDLSAIFEFAVVRGLVEANPIPSLRGLLRVPASESKAAMTREQIQKFYQALRGYRGYPET 237
             L+ I  + V  GL+ ANP+  +R + + P  E+ AA+  E++ +    L        T
Sbjct: 176 QRLNEIMTYGVNSGLIFANPLSGIRAVFKKPKKENMAALPPEELPELMLELANASIKRTT 235

Query: 238 ALCLRLIALTACRPGEAADAEWEEFDFEDAVWRRPAAKMKARREHVSPLSAQAIAVLKDL 297
              +     T  RP EAA   W + DFE  +W  P  +MK RR H  PLS QA+A+L  L
Sbjct: 236 RCLIEWQLHTMTRPAEAATTRWSDIDFEKRIWTIPPERMKKRRPHSIPLSDQAMALLDIL 295

Query: 298 QRITGGGRYLFP-HRSGKGFTTPNRLTYAMRDMNLGRGTTPHCWRTTFSTWANENGFRPD 356
           +  +G   Y+FP  R+ +          A++ M        H  R+  ST  NE+G+ P+
Sbjct: 296 KSHSGHREYVFPADRNPRTHANSQTANMALKRMGFQDRLVSHGMRSIASTILNEHGWDPE 355

Query: 357 AIERQLAHVESNKVRATYNKALLLDQRRSLLQAWAGYLSAA 397
            IE  LAHV+ ++VR+ YN+A  +++RR+++  W+ ++  A
Sbjct: 356 LIEVALAHVDKDEVRSAYNRADYIERRRTMMAWWSEHIQKA 396