Pairwise Alignments

Query, 403 a.a., Integrase from Pseudomonas stutzeri RCH2

Subject, 394 a.a., integrase from Pseudomonas simiae WCS417

 Score =  213 bits (541), Expect = 1e-59
 Identities = 130/391 (33%), Positives = 200/391 (51%), Gaps = 14/391 (3%)

Query: 6   LTDAKVKSVKPADRDWKLSDGGGLFLLVKPAGGKLWRWKYRLQGKENLFAIGSFPQVSLA 65
           LTD   K  KP +  + + D  GL L V P+G K W +++   GK+   +IG++P+  L 
Sbjct: 3   LTDTAAKQAKPRENGYTIPDSLGLSLYVAPSGVKSWHFRFTWLGKQVRISIGTYPETGLK 62

Query: 66  EARTAREKARALVKQGIHPAHERQQVKQRNLEALAERKRAQESSFAKVAQAYLAEIKPVF 125
           EAR  R++AR  +  G+ P   R++ K   + A  +       +F +V   +LA  K   
Sbjct: 63  EARARRDEAREDIANGVDPRDSRREKKAGMIAAGGQ-------TFRRVYDEWLAFRKGSI 115

Query: 126 AHSSYRTKESRIRKYLSPKFDGMPMSDIGVKQIRPLLEECKAHGAWA-AIHVKGDLSAIF 184
           +  +YR   + +   + P      +  I    +  L+   +  G+ A A+ V+  +S +F
Sbjct: 116 SPGTYRVISNAMALDVLPTLGDRQIDAIKRADVIALIRRVEKRGSVATAVKVRQRMSQVF 175

Query: 185 EFAVVRGLVEANPIPSLRGLL-RVPASESKAAMTREQIQKFYQALRGYRGYPETALCLRL 243
            +A+  G++EANP   +  +  ++   +    +   ++ +   A+R      +    L L
Sbjct: 176 SYAIATGVIEANPTAEMHAVTEKMGQHKPHPFLPFSEMPRIMAAIRDCASGQQLKAALML 235

Query: 244 IALTACRPGEAADAEWEEFDFEDAVWRRPAAKMKARREHVSPLSAQAIAVLKDLQRITGG 303
           +  TA RPGE   AEW E D + A+W  PAAKMK RR+H  PLS QAIA+L+ +  ITG 
Sbjct: 236 MIYTASRPGEVRHAEWSEIDLDAAIWTTPAAKMKMRRDHAVPLSTQAIAILESMLPITGD 295

Query: 304 GRYLFPHRSGKGFTTPNRLTYA---MRDMNLGRGTTPHCWRTTFSTWANENGFRPDAIER 360
            RY+F +R+    T P    YA   M    L    +PH +R  FST  N  G+  D IER
Sbjct: 296 KRYVFINRNST--TAPIGTNYANNVMDSCGLTGIQSPHGFRHLFSTEMNGRGYNRDWIER 353

Query: 361 QLAHVESNKVRATYNKALLLDQRRSLLQAWA 391
           QLAH +S+ +R  YN A  LDQRR ++Q WA
Sbjct: 354 QLAHADSSFIRDVYNHATYLDQRRGMMQEWA 384