Pairwise Alignments

Query, 403 a.a., Integrase from Pseudomonas stutzeri RCH2

Subject, 411 a.a., integrase from Pseudomonas simiae WCS417

 Score =  160 bits (405), Expect = 6e-44
 Identities = 111/392 (28%), Positives = 185/392 (47%), Gaps = 11/392 (2%)

Query: 6   LTDAKVKSVKPADRDWKLSDGGGLFLLVKPAGGKLWRWKYRL-QGKENLFAIGSFPQVSL 64
           L D  +  ++P    ++  DG GL+  VKP G K W  +Y+   GK +   +G +P++S 
Sbjct: 11  LADTTLAGLEPEHATYREQDGNGLYFRVKPNGQKSWELRYKKPDGKWSWLGLGGYPEISG 70

Query: 65  AEARTAREKARALVKQGIHPAHERQQVKQRNLEALAERKRAQESSFAKVAQAYLAEIKPV 124
           + AR    + R     G +P   +Q  K  +       + A  ++F  + + +    +  
Sbjct: 71  SLARQKAAQLREDASTGKNPLVSKQARKVAD-------QVAANNTFEALGREWFEARRTS 123

Query: 125 FAHSSYRTKESRIRKYLSPKFDGMPMSDIGVKQIRPLLEECKAHGAWAAI-HVKGDLSAI 183
           +   + R     +  ++ P F     ++I   +    L   +  G    +  V+     I
Sbjct: 124 WESGTSRRVLGALELHVFPVFGKRVYTEILPLEWMEFLRGMEQKGIIEQMGRVRAFCKEI 183

Query: 184 FEFAVVRGLVEANPIPSLRGLLRVPASESKAAMTREQIQKFYQALRGYRGYPETALCLRL 243
           ++ A V G    NP+  L   L+  ++E+ A ++ E++    +A+  Y    +  + LRL
Sbjct: 184 YDLARVTGRAVHNPLEGLSKFLQSRSAENYAHVSIEELPALLRAINSYPHAKDVRIGLRL 243

Query: 244 IALTACRPGEAADAEWEEFDFEDAVWRRPAAKMKARREHVSPLSAQAIAVLKDLQRITGG 303
           ++L A RP E  +A W E D    +W  PA +MK RREHV PLS Q+I  L +L+ +TG 
Sbjct: 244 LSLLASRPSEIREARWSEIDLTKKLWTIPAERMKRRREHVVPLSRQSIEALTELRTLTGA 303

Query: 304 GRYLFPHRSGKGFTTPNRL-TYAMRDMNLGRGTTPHCWRTTFSTWANENGFRPDAIERQL 362
              LFP R  +     N +   A+R +      T H +R   ST  NE GF  + IE QL
Sbjct: 304 YPLLFPGRKDRTIPRSNTVFLMALRRLGYAGRQTGHGFRHIASTILNEQGFDENHIEAQL 363

Query: 363 AHVESNKVRATYNKALLLDQRRSLLQAWAGYL 394
           +H +   +   YNKA+ L QRR ++Q +A +L
Sbjct: 364 SHAKEG-IAGVYNKAVYLPQRRVMMQWYADHL 394