Pairwise Alignments

Query, 403 a.a., Integrase from Pseudomonas stutzeri RCH2

Subject, 432 a.a., hypothetical protein from Sphingobium sp. HT1-2

 Score =  130 bits (327), Expect = 7e-35
 Identities = 107/396 (27%), Positives = 176/396 (44%), Gaps = 34/396 (8%)

Query: 28  GLFLLVKPAGGKLWRWKYRLQGKENLFAIGSF--------------PQVSLAEARTAREK 73
           GL L ++  G K+W  + ++  +     +G +                +SLAEAR    +
Sbjct: 35  GLHLRLE-GGAKVWALRLKIGERRRDIGLGRYNGKIGLTLEQSVREEGLSLAEARDKARE 93

Query: 74  ARALVKQGIHPAHERQQVKQRNLEALAERKRAQESSFAKVAQAYLAEIKPVFAHSSY-RT 132
            RA V+ G+ P  E++  KQ      A    A+  +F + A+  +++    + +  + + 
Sbjct: 94  IRAKVRSGVDPIEEKRVQKQA-----AHIGTAKSKTFKECAELCISDKSGEWKNGKHVKQ 148

Query: 133 KESRIRKYLSPKFDGMPMSDIGVKQIRPLLEECKAHGAWAAIHVKGDLSAIFEFAVVRGL 192
             + +  Y  PK   +P+S +    I  +L    A     A  ++G +  +  +A V G 
Sbjct: 149 WSATLETYAYPKLGKLPVSSVDRGLILDVLRPIWATKGETASRLRGRIETVLNWAKVNGY 208

Query: 193 VEANPIPSLRGLLRVPASESK-------AAMTREQIQKFYQALRGYRGYPETALCLRLIA 245
            +     + +G L    S+ +       A++   ++  F   LR   G   +A  L    
Sbjct: 209 RDGENPAAWKGNLEHSLSKRQKLTRGHHASLPYAELGSFMADLRKRDGI--SARALEFAI 266

Query: 246 LTACRPGEAADAEWEEFDFEDAVWRRPAAKMKARREHVSPLSAQAIAVLKDLQRITGGGR 305
           LT  R GE   A W E D +  +W  PA +MKA +EH  PLS   +A+LK L R+ G   
Sbjct: 267 LTVARSGEVRKATWAEIDLDRKMWVIPAERMKAGKEHRVPLSDAVVALLKALPRVAGSD- 325

Query: 306 YLFPHRSGKGFTTPNRLTYAMRDMNLGRGTTPHCWRTTFSTWANE-NGFRPDAIERQLAH 364
           Y+FP   G G  +   LT  ++ M+   G T H +R+TF  WA E   +  + IE  LAH
Sbjct: 326 YVFPAPRG-GAMSDMALTAVLKRMDRA-GLTQHGFRSTFREWAGEVTAYPREVIEHALAH 383

Query: 365 VESNKVRATYNKALLLDQRRSLLQAWAGYLSAAEHS 400
             ++K  A Y +  LL +R  L+  WA Y    + S
Sbjct: 384 SLADKAEAAYQRGSLLPKRVKLMADWATYAGTVQQS 419