Pairwise Alignments

Query, 403 a.a., Integrase from Pseudomonas stutzeri RCH2

Subject, 404 a.a., Integrase from Sphingobium sp. HT1-2

 Score =  212 bits (540), Expect = 1e-59
 Identities = 134/397 (33%), Positives = 207/397 (52%), Gaps = 16/397 (4%)

Query: 5   LLTDAKVKSVKPADRDWKLSDGGGLFLLVKPAGGKLWRWKYRLQGKENLFAIGSFPQVSL 64
           +LT  ++ ++KP ++ +K++D  GL++LV P G  LWR K+R  G E   A+G +P V L
Sbjct: 1   MLTTIQINALKPREKPYKVADAKGLYILVNPNGSLLWRVKFRFHGIEKKMALGRYPDVGL 60

Query: 65  AEARTAREKARALVKQGIHPAHERQQVKQRNLEALAERKRAQESSFAKVAQAYLAEIKPV 124
            EAR  R++AR  ++ G+ P   R Q K        E + A  ++F  V   ++ +++  
Sbjct: 61  KEARQKRDEAREQLEGGVDPLAARIQAK-------IEAEAAARTTFRVVTDEFIEKMERE 113

Query: 125 FAHSSYRTKESRIRKYLSPKFDGMPMSDIGVKQIRPLLEECKAHGAW-AAIHVKGDLSAI 183
               +   K    R  L P     P+++I   ++   L+  +  G + +AI  +     +
Sbjct: 114 GKAPATLKKMRWFRDELQPTIGHRPIAEISAHELLNALKRFERKGHFESAIRARSFSGRV 173

Query: 184 FEFAVVRGLVEANPIPSLRGLLRVPASESKAAMTRE-QIQKFYQALRGYRGYPETALCLR 242
           F +AV     + NP   LRG L  P  +  AA+    ++ +  +A+ GY G  ET + L+
Sbjct: 174 FRYAVATLRAQHNPADILRGALITPKVKHHAALLEPAKVGELLRAIDGYGGKIETRIALQ 233

Query: 243 LIALTACRPGEAADAEWEEFDFEDAVWRRPAAKMKARREHVSPLSAQAIAVLKDLQRITG 302
           L      RPGE   AEW E DF+ AVWR PA + K R+ H  PLS Q + +L++L+ +  
Sbjct: 234 LAPHVYLRPGELRKAEWGEIDFDAAVWRVPAGRTKMRKPHAVPLSTQVVTLLRELRAMGN 293

Query: 303 GGRYLFPHRSGKGFTTP---NRLTYAMRDMNLGRG-TTPHCWRTTFSTWANENG-FRPDA 357
            G YLFP  S   F  P   N L  A+R +   R   T H +R+  ST  NE+G + PDA
Sbjct: 294 LGSYLFPANS--TFLKPICENTLNVALRRLGFTRDEMTSHGFRSIASTLLNESGLWHPDA 351

Query: 358 IERQLAHVESNKVRATYNKALLLDQRRSLLQAWAGYL 394
           IER LAH E + VRA Y++    ++R  + Q W+ YL
Sbjct: 352 IERSLAHRERDSVRAAYHRGAHWEERVRMAQWWSDYL 388