Pairwise Alignments

Query, 403 a.a., Integrase from Pseudomonas stutzeri RCH2

Subject, 400 a.a., Phage integrase from Sphingobium sp. HT1-2

 Score =  216 bits (551), Expect = 7e-61
 Identities = 135/394 (34%), Positives = 207/394 (52%), Gaps = 12/394 (3%)

Query: 6   LTDAKVKSVKPADRDWKLSDGGGLFLLVKPAGGKLWRWKYRLQGKENLFAIGSFPQVSLA 65
           L+   +   KP ++ +KL+DG GL+LLV P GG+ WR  YR  GK    A+G FP ++LA
Sbjct: 3   LSALALSKAKPREKPYKLADGHGLYLLVTPQGGRYWRMNYRFDGKAKTMAMGVFPLITLA 62

Query: 66  EARTAREKARALVKQGIHPAHERQQVKQRNLEALAERKRAQESSFAKVAQAYLAEIKPVF 125
           EAR  RE AR L+  G  P  +R++++       A+      + F  VA+ +LA+ +   
Sbjct: 63  EAREKREDARKLLAAGSDPCAKRKEIE-------AQEAFEATTGFRIVAEEWLAKREREG 115

Query: 126 AHSSYRTKESRIRKYLSPKFDGMPMSDIGVKQIRPLLEECKAHGAW-AAIHVKGDLSAIF 184
                  K   + ++  P      + +I   ++  +L + +  G    A  ++     +F
Sbjct: 116 LGDITIGKIKWLLEFAYPSLGDRKIGEITSMELLAVLRQVEGRGRHETARRLRSVCGRVF 175

Query: 185 EFAVVRGLVEANPIPSLRGLLRVPASESKAAMTR-EQIQKFYQALRGYRGYPETALCLRL 243
            +A+  G  E +   +LR  L  P  +  AA+T  +Q+    +A+ G+ G+  T   LRL
Sbjct: 176 RYAIATGRAEHDLSANLRDALTTPKVKHLAAITSSQQVGPLLRAIDGFDGHAVTKAALRL 235

Query: 244 IALTACRPGEAADAEWEEFDFEDAVWRRPAAKMKARREHVSPLSAQAIAVLKDLQRITGG 303
                 RPGE   AEW E DFE A+W  PA KMK RR H  PLS Q++ +L  ++ +TG 
Sbjct: 236 APHVFVRPGELRHAEWPEIDFEKALWSIPAEKMKMRRPHRVPLSRQSLTILSSIREVTGA 295

Query: 304 GRYLFP-HRSGKGFTTPNRLTYAMRDMNL-GRGTTPHCWRTTFSTWANENG-FRPDAIER 360
           G+++FP  +S K   + N L  A+R +   G   T H +R   ST  NE G + PDAIER
Sbjct: 296 GKFVFPGFQSLKRPMSENALNGALRRLGYSGDEMTSHGFRAMASTLLNEMGKWHPDAIER 355

Query: 361 QLAHVESNKVRATYNKALLLDQRRSLLQAWAGYL 394
           QLAH E++ VR  Y +    ++R  ++QAW+ YL
Sbjct: 356 QLAHAEADAVRRAYARGEYWEERVVMMQAWSDYL 389