Pairwise Alignments

Query, 403 a.a., Integrase from Pseudomonas stutzeri RCH2

Subject, 409 a.a., tyrosine-type recombinase/integrase from Serratia liquefaciens MT49

 Score =  166 bits (420), Expect = 1e-45
 Identities = 116/405 (28%), Positives = 196/405 (48%), Gaps = 25/405 (6%)

Query: 6   LTDAKVKSVKPADRDWKLSDGGGLFLLVKP---AGGKLWRWKYRLQ--GKENLFAIGSFP 60
           LTD ++KS KPA+++  L DG GL L + P    G K W ++Y +    K    ++G++P
Sbjct: 8   LTDTEIKSTKPAEKEVNLFDGDGLLLRIAPLAKGGKKNWYFRYAVPVTKKRTKVSLGTYP 67

Query: 61  QVSLAEARTAREKARALVKQGIHPAHERQQVKQRNLEALAERKRAQESSFAKVAQAYLAE 120
            ++LA+AR  R++  +L+  GI P       +  N +     K A E +F  VA+ +L E
Sbjct: 68  HLTLAKARALRDEYLSLLANGIDP-------QVHNTQKANALKEATEHTFQAVAKKWLDE 120

Query: 121 ------IKPVFAHSSYRTKESRIRKYLSPKFDGMPMSDIGVKQIRPLLEECKAHGAWAAI 174
                 I    A+  +R+ E  I     P     P+ +I  K ++  L+  +  G    +
Sbjct: 121 KVKTSGISQDHANDIWRSLERNI----FPTLGDTPIKEIRPKMLKQHLDPIEKRGVLETL 176

Query: 175 H-VKGDLSAIFEFAVVRGLVEANPIPSLRGLLRVPASESKAAMTREQIQKFYQALRGYRG 233
             +   L+ IF +A    L+E NP  +L      P  ++  A+   ++ +F   L+    
Sbjct: 177 RRIISRLNEIFRWAATEELIEFNPADNLAQRFSKPKKQNMPALPPTELPRFLTVLKNASV 236

Query: 234 YPETALCLRLIALTACRPGEAADAEWEEFDFEDAVWRRPAAKMKARREHVSPLSAQAIAV 293
             ET L +    LT  RPGEA    W + D ++++W  PA  MK ++ H  PLS +A+ V
Sbjct: 237 RMETRLLIEWQLLTWVRPGEAVRTRWADIDTDNSMWNIPAEFMKMKKPHKVPLSKEALRV 296

Query: 294 LKDLQRITGGGRYLFPH-RSGKGFTTPNRLTYAMRDMNLGRGTTPHCWRTTFSTWANENG 352
           ++ ++ I+G   ++FP  ++            A+  M  G     H  R+   T A E+ 
Sbjct: 297 IESMKSISGNREWVFPSIKAPLNHMHEQTANAAIIRMGFGGELVAHGMRSIARTAAEESS 356

Query: 353 -FRPDAIERQLAHVESNKVRATYNKALLLDQRRSLLQAWAGYLSA 396
            FR + +E  LAH + +++ A YN+A  L +R  L+Q W+ Y+ A
Sbjct: 357 KFRTEVLEAALAHSKKDEIIAAYNRAECLAERVVLMQWWSDYVIA 401