Pairwise Alignments

Query, 403 a.a., Integrase from Pseudomonas stutzeri RCH2

Subject, 421 a.a., integrase from Escherichia coli ECRC101

 Score =  187 bits (476), Expect = 4e-52
 Identities = 134/421 (31%), Positives = 208/421 (49%), Gaps = 52/421 (12%)

Query: 6   LTDAKVKSVKPADRDWKLSDGGGLFLLVKPAGGKLWRWKYRLQGKENLFAIGSFPQVSLA 65
           LTDAK+++ KP D+ +KL+DG G+FLLV P G + WR +YR+ GKE   A+  +P+VSL+
Sbjct: 3   LTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALVVYPEVSLS 62

Query: 66  EARTAREKARALVKQGIHPAHERQQVK-----QRNLEALAERKRAQESSFA-----KVAQ 115
           EART R++AR L+ +G+ P  +++  K     Q + E +A R  A    +A     KV +
Sbjct: 63  EARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKVLK 122

Query: 116 AYLAEIKPVFAHSSYRTKESRIRKYLSPKFDGMPMSDIGVKQIRPLLEECKAHGAWAAIH 175
           +    + P   +    T        L+     +P+     KQI  +           A  
Sbjct: 123 SLETHVFPFIGNRDITT--------LNTPDLLIPVRAAEAKQIYEI-----------ASR 163

Query: 176 VKGDLSAIFEFAVVRGLVEANPIPSLRGLLRVPASESKAAMTREQIQKFYQALRGYRGYP 235
           ++  +SA+  +AV  G++  NP   + G L     + + A+   ++ +    +  Y+G P
Sbjct: 164 LQQRISAVMRYAVQSGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQP 223

Query: 236 ETALCLRLIALTACRPGEAADAEWEEFDFEDAVWRRPAAK------------MKARREHV 283
            T L + L  L   R  E   A W E D ++A+W  PA +             K R  H+
Sbjct: 224 VTQLAVMLNLLVFIRSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHL 283

Query: 284 SPLSAQAIAVLKDLQRITGGGRYLF--PHRSGKGFTTPNRLTYAMRDMNLGRGTTP---- 337
            PLS Q +A+L +LQ   G    +F   H   K   + N +  A+R M  G  TT     
Sbjct: 284 VPLSKQVVAILAELQTWAGENGLIFTGAHDPRKPI-SENTVNKALRVM--GYDTTQDVCG 340

Query: 338 HCWRTTFSTWANENG-FRPDAIERQLAHVESNKVRATY-NKALLLDQRRSLLQAWAGYLS 395
           H +R    +   E+G +  DA+ERQ++H E N VRA Y +KA  L++RR +LQ WA +L 
Sbjct: 341 HGFRAMACSALIESGLWSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLD 400

Query: 396 A 396
           A
Sbjct: 401 A 401