Pairwise Alignments

Query, 403 a.a., Integrase from Pseudomonas stutzeri RCH2

Subject, 417 a.a., site-specific integrase from Dickeya dianthicola ME23

 Score =  157 bits (396), Expect = 7e-43
 Identities = 125/412 (30%), Positives = 187/412 (45%), Gaps = 27/412 (6%)

Query: 5   LLTDAKVKSVKPADRDWKLSDGGGLFLLVKPAGGKLWRWKYRLQGKENLFAIGSFPQ--V 62
           +LTD K+K++KP ++ +K+SD  GL++ V  +G   +R+ YR+ G+     IG + +  +
Sbjct: 1   MLTDTKLKNLKPEEKLYKVSDRDGLYVAVLTSGSVSFRYDYRINGRRETLVIGQYGRDGI 60

Query: 63  SLAEARTAREKARALVKQGIHPAHERQQVKQRNLEALAERKRAQESSFAKVAQAYLAEIK 122
           SLAEAR     A+ L+K G  PA  ++            +K     +FA     Y+  I 
Sbjct: 61  SLAEAREELIAAKKLLKAGQSPAAAKRD---------GIKKIRGAETFAVHTDHYMKHI- 110

Query: 123 PVFAHSSYRTKESRIRKYLSPKFDGMPMSDIGVKQIRPLLEECKAHGAWA-AIHVKGDLS 181
            V A S+   KES I + + P      M++I    +R L +     G  A A+  +  +S
Sbjct: 111 -VLADSTRTMKESVIERDIMPVLGNKMMAEITTSMVRDLCDRIVERGGRATAVQAREIIS 169

Query: 182 AIFEFAVVRGLVEANPIPSLRGLLRVPASESKAAMTREQIQKFYQALRGYRGYPETALCL 241
           +++  A  RG    NP   ++             +  E++  F++ L          L L
Sbjct: 170 SVYRHANDRGHGLFNPASDIKPSSIAMFKPRDRCLQPEEVGIFFRTLDTVAAMATMKLAL 229

Query: 242 RLIALTACRPGEAADAEWEEFDFEDAVWRRPAAKMKARREHVSPLSAQAIAVLKDLQRIT 301
           +L+ LT  R  E  +A W+E DF+   W  P+ +MK  R HV  L  QA  ++  LQ   
Sbjct: 230 KLVLLTMVRKNEFINATWKEVDFKKWEWVIPSDRMKGSRAHVIYLPRQAQDLMVGLQMCA 289

Query: 302 GGGRYLFPHRSG----KGFTTPNRLTYAMRDMNLGRG-----TTPHCWRTTFSTWANENG 352
           GG  YL P R         +  NRL     +     G        H  R T ST  +E G
Sbjct: 290 GGSEYLLPGRYSVIRPLSNSALNRLITTTVEAAQAAGYNLEHFAVHDMRRTASTLLHEAG 349

Query: 353 FRPDAIERQLAHVESNKVRATYNKALLLDQRRSLLQAWAGYLS---AAEHSD 401
           +  D IE+ LAH E   VR+ YNKA    QR  +LQ WA  +    A EH D
Sbjct: 350 YPSDWIEKALAH-EQRGVRSVYNKAEYARQRAYMLQQWADMIDSWIAGEHYD 400