Pairwise Alignments

Query, 403 a.a., Integrase from Pseudomonas stutzeri RCH2

Subject, 412 a.a., integrase from Dickeya dadantii 3937

 Score =  199 bits (505), Expect = 2e-55
 Identities = 124/404 (30%), Positives = 216/404 (53%), Gaps = 25/404 (6%)

Query: 6   LTDAKVKSVKPADRDWKLSDGGGLFLLVKPAGGKLWRWKYR--LQGKENLFAIGSFPQVS 63
           LTD ++K+ KP D D++L DG GL LL+K +G KLW+++Y   L  +    + G++P VS
Sbjct: 8   LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67

Query: 64  LAEARTAREKARALVKQGIHPA-HERQQVKQRNLEALAERKRAQESSFAKVAQAYL---- 118
           L++AR  R +++ L+ + I P  H+++QV+          + A+ ++F  VA+ +     
Sbjct: 68  LSDARKLRAESKVLLAKDIDPQEHQKEQVRNS--------QDAKTNTFLLVAERWWNVKK 119

Query: 119 AEIKPVFAHSSYRTKESRIRKYLSPKFDGMPMSDIGVKQIRPLLEECKAHGAWAAIH-VK 177
           A +   +A   +R+ E  +     P    + +++I    +   ++  +A GA   +  + 
Sbjct: 120 ASVTEDYADDIWRSLERDV----FPAIGDISVTEIKAHTLVKAVQPVQARGALETVRRLF 175

Query: 178 GDLSAIFEFAVVRGLVEANPIPSLRGLLRVPASESKAAMTREQIQKFYQALRGYRGYPET 237
             ++ +  +A   GL++A P  ++      P  ++  ++  +Q+ +  Q +R       T
Sbjct: 176 QRINEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMQTMRTASISVST 235

Query: 238 ALCLRLIALTACRPGEAADAEWEEFDFEDAVWRRPAAKMKARREHVSPLSAQAIAVLKDL 297
                   LT  RP EAA+A W+E DF  + W+ PAA+MK  R+H  PLS +A+++L+ +
Sbjct: 236 RCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSNEALSILEMM 295

Query: 298 QRITGGGRYLFPHRSGKGFTTP---NRLTYAMRDMNLGRGTTPHCWRTTFSTWANENGFR 354
           + + GG  ++FP R     T P     +  A++   LG     H  R+  ST  NE GF 
Sbjct: 296 KSLNGGREFIFPSRIKP--TKPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFP 353

Query: 355 PDAIERQLAHVESNKVRATYNKALLLDQRRSLLQAWAGYLSAAE 398
           PD IE  LAHV+ N+VR  YN++  L+QRR ++Q WA ++ +AE
Sbjct: 354 PDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADFVKSAE 397