Pairwise Alignments

Query, 403 a.a., Integrase from Pseudomonas stutzeri RCH2

Subject, 396 a.a., phage-related integrase from Agrobacterium fabrum C58

 Score =  139 bits (351), Expect = 1e-37
 Identities = 110/405 (27%), Positives = 178/405 (43%), Gaps = 33/405 (8%)

Query: 5   LLTDAKVKSVKPADRDWKLSDGGGLFLLVKPAGGKLWRWKYRLQGKENLFAIGSFPQVSL 64
           ++     ++V+   +  +  DGGGL+L+V  +G K W + YR   +     +G    V+L
Sbjct: 4   IMNKLSARAVETISKPGRHGDGGGLYLVVDKSGAKRWVFLYRRSDRLREMGLGGVHSVTL 63

Query: 65  AEARTAREKARALVKQGIHPAHERQQVKQRNLEALAERKRAQESSFAKVAQAYLAEIKPV 124
           A+AR   + AR  ++ G+ P   +                    +F   A  ++A +KP 
Sbjct: 64  AKARELAQDARTKLQAGVDPIQAKHTAPPL------------VPTFGDEADDFIAAMKPQ 111

Query: 125 FAHSSYRTK-ESRIRKYLSPKFDGMPMSDIGVKQIRPLLEECKAHGAWAAIHVKGDLSAI 183
           F ++ +  + E  +R+Y +P    + ++++    +  +L+      +  A  V+G +  +
Sbjct: 112 FRNAKHVAQWEMTLREYAAPLRQKL-ITEVTTADVLGVLKPIWLTKSETASRVRGRIERV 170

Query: 184 FEFAVVRGLVEANPIPSLRGLL-------RVPASESKAAMTREQIQKFYQALRGYRGYPE 236
            + A  +GL         RG L       R  A     AM    +  F   LR       
Sbjct: 171 LDAAKAKGLRTGENPALWRGHLDKLLPKRRKLARGHHKAMPYADVAAFIIELRKREAVAA 230

Query: 237 TALCLRLIALTACRPGEAADAEWEEFDFEDAVWRRPAAKMKARREHVSPLSAQAIAVLKD 296
           TAL      LTA R GE   A+W E D++D +W  PA +MKA REH  PLS++ I +LK 
Sbjct: 231 TAL--EFTILTAARSGETLGAKWHEIDWKDKIWTVPAERMKAAREHRVPLSSRTITILKK 288

Query: 297 LQRI-TGGGRYLFPHRSGKGFTTPNRLTYAMRDMNLGR---GTTPHCWRTTFSTWANE-N 351
           L    +    ++FP     G      L+    DM L R     T H +R++F  W  E +
Sbjct: 289 LAEFGSDENSFVFP-----GQKPGKPLSVMAMDMVLRRMEVDVTVHGFRSSFRDWCGEVS 343

Query: 352 GFRPDAIERQLAHVESNKVRATYNKALLLDQRRSLLQAWAGYLSA 396
            F  D  E  LAHV  +K    Y +   L++RR L+ AW  +  A
Sbjct: 344 NFPRDVAEAALAHVVGDKTERAYRRGDALEKRRKLMAAWEKFCIA 388