Pairwise Alignments

Query, 403 a.a., Integrase from Pseudomonas stutzeri RCH2

Subject, 426 a.a., Prophage integrase IntA from Acinetobacter radioresistens SK82

 Score =  160 bits (405), Expect = 7e-44
 Identities = 124/405 (30%), Positives = 196/405 (48%), Gaps = 34/405 (8%)

Query: 6   LTDAKVKSVKPADRDWKLSDGGGLFLLVKPAGGKLWRWKYR--LQGKENLFAIGSFPQVS 63
           L D K  +     +D +LSDG GL LL++  G  +WR+ Y   +  K N   +G++P +S
Sbjct: 17  LRDIKSNNPNGLQKDIRLSDGAGLNLLIRKNGTVMWRFDYTRPVSKKRNTMTVGNYPAMS 76

Query: 64  LAEARTAREKARALVKQGIHPAHERQQVKQRNLEALAERKRAQESSFAKVAQAYLAEIKP 123
           LA+AR  R++ RAL+ +G  P  E+Q V+++        +  Q+++F  VA+ Y  + K 
Sbjct: 77  LAKAREYRDQFRALLAEGKDPQVEKQGVEEK-------ERLKQQATFKSVAELY--KSKQ 127

Query: 124 VFAHSSYRTKESRIRKYLSPKFDGMPMSDIGVKQIRPLLE--ECKAHGAWAAIHVKGDLS 181
             A ++ +  +    K L      MP+SDI  + +  ++E  E K H   +A+ ++   S
Sbjct: 128 RLAEATVKRNDGIFEK-LYRDVGNMPISDITPRDLAKVIEKDENKGH-IESAMRIRSKAS 185

Query: 182 AIFEFAVVRGLVEANPIPSLRGLLRVPASESKAAMTRE--------QIQKFYQALRGYRG 233
            +F FAV  GL E +    L G +        +A+T           I  +   L     
Sbjct: 186 QVFRFAVKMGLCERDVAQDLAGTITQREKNHYSALTDPFDFACLLFDIDHYESQL----- 240

Query: 234 YPETALCLRLIALTACRPGEAADAEWEEFDFEDAVWRRPAAKMKARR--EHVSPLSAQAI 291
                L L+L  L   R GE  +A+W + +FE A W    +K  A+   +H+ PLS QAI
Sbjct: 241 -VHVKLALQLAPLVFVRIGELRNAKWSDINFETATWSYTPSKTSAKTGLDHIVPLSTQAI 299

Query: 292 AVLKDLQRITGGGRYLFPHRSGKGFTTPN-RLTYAMRDMNLGR-GTTPHCWRTTFSTWAN 349
           A+LK+    T    ++FP RS K     +  +  A+R M  G+   T H +R    T  +
Sbjct: 300 AILKEALNFTNNSDFVFPSRSDKHRPISDMSINMALRRMGYGKEDMTGHGFRAIARTLLD 359

Query: 350 E-NGFRPDAIERQLAHVESNKVRATYNKALLLDQRRSLLQAWAGY 393
           E   F  D IE+QLAH   +     YN+   LD+RR ++Q W+ Y
Sbjct: 360 EVLEFPLDIIEQQLAHQVRDMHGRAYNRTKHLDKRRVMMQRWSDY 404