Pairwise Alignments

Query, 403 a.a., Integrase from Pseudomonas stutzeri RCH2

Subject, 426 a.a., Prophage integrase IntA from Acinetobacter radioresistens SK82

 Score =  137 bits (345), Expect = 6e-37
 Identities = 107/396 (27%), Positives = 181/396 (45%), Gaps = 32/396 (8%)

Query: 25  DGGGLFLLVKPAGGKLWRWKYRLQGKENLFAIGSFPQVSLAEARTAREKARALVKQGIHP 84
           +G     +++   GK      +L+       IG +P+VSLAEAR    + R  ++ GI P
Sbjct: 35  EGNSRVWILRAVVGKRLDKDGKLKPHRRDIGIGPYPEVSLAEARAKATELRLQIRSGIDP 94

Query: 85  -AHERQQVKQRNLEALAERKRAQESSFAKVAQAYLAEIKPVFAHSSYRTK-ESRIRKYLS 142
            AH+++Q+++  ++ L ++      +F + A+  +A       +  +  +  S +  Y+ 
Sbjct: 95  IAHKQEQLEKLYVQKLRDK------TFMECAKVVIANKTRELKNEKHIGQWTSTLETYIY 148

Query: 143 PKFDGMPMSDIGVKQIRPLLEECKAHGAWAAIHVKGDLSAIFEFAVVRGLVEANPIPSLR 202
           P    + +  I    I  +L          A  ++G +  IF++A   G  E +     +
Sbjct: 149 PTLGDISIGTITKVDIAEVLRPIWIKKNETAKRIRGRIETIFDYAKAMGYFEGDNPAEWK 208

Query: 203 GLLRV------PASESKAAMTREQIQKFYQALRGYRGYPETALCLRLIALTACRPGEAAD 256
           G L          S    ++  EQ+  F Q LR  +G    AL      LTACR GE   
Sbjct: 209 GNLEPIFGNIKQESRPHPSLPYEQVAGFIQHLRQKKGISPKAL--EFAILTACRSGEIFG 266

Query: 257 AEWEEFDFEDAVWRRPAAKMKARREHVSPLSAQAIAVLKDLQRITGGGRYLFPHRSGKGF 316
           A+W+E DF++ VW  P  +MKA +EH  PLS +A+ +LK +Q  T    ++FP       
Sbjct: 267 AKWQEIDFKNKVWIIPKERMKANKEHRVPLSQEAVNLLKSIQEYTQPQDFIFPAPRNGAM 326

Query: 317 TTPNRLTYAMRDMN--------LG-------RGTTPHCWRTTFSTW-ANENGFRPDAIER 360
            +   LT  ++ M+        LG       R  T H +R+TF  W A++  +  +  E 
Sbjct: 327 LSDMSLTILIKRMHEQKLKENGLGYIDPKQNRVITTHGFRSTFRDWSADKTDYPREVCEH 386

Query: 361 QLAHVESNKVRATYNKALLLDQRRSLLQAWAGYLSA 396
            LAH   ++V A Y +   L++R+ L+  WA + SA
Sbjct: 387 VLAHKLPDEVEAAYLRGAYLEKRKGLMADWAEFCSA 422