Pairwise Alignments

Query, 420 a.a., outer membrane porin, OprD family. from Pseudomonas stutzeri RCH2

Subject, 420 a.a., proline-specific outer membrane porin D from Pseudomonas putida KT2440

 Score =  219 bits (558), Expect = 1e-61
 Identities = 137/398 (34%), Positives = 206/398 (51%), Gaps = 35/398 (8%)

Query: 39  RNFYMNRDFRS--GDGQSKAEEWAQGFMLKMESGYTEGPIGFGVDAIGLLGVKLDSSPDR 96
           RN++++ DFRS  G GQ+  +EWAQGF+ ++ SG+TEG +G G+DA G LG+KLD     
Sbjct: 35  RNYFLHSDFRSPSGSGQNYRQEWAQGFIGEVRSGFTEGTVGVGIDAHGFLGLKLDGGRGH 94

Query: 97  VGTGILQSDREAPNRAQDDYGSAGITAKAKLSATTLHVGTLQPILPVVMRNDSRLLPQTY 156
            GTG+L   R++  RA+ +Y SAG   K +L  T L  G +    PV    D RL P+  
Sbjct: 95  SGTGLLP--RDSDGRAESEYSSAGAALKMQLGNTQLRYGEMMVETPVFDTGDKRLHPEYA 152

Query: 157 RGAWLQSKEIDGLTLDLGKLDRVN-QRNSSDNEEMTAFNGGRRNIQFGRQTSSDEFLFAG 215
            G W+++ +     L  G+    N Q NSS +++   F+G      +G  T +     AG
Sbjct: 153 TGWWVENTDQPDWRLQAGRFTAFNNQDNSSTHDD---FSG------YGATTHNRAISLAG 203

Query: 216 ARYAWSPELSTSYYYGGLDGIYKEHNFGLVHVLPLGDKQSFKSDLRYVHQTDDGGSN--- 272
           A +A +     + Y G L+  +++    L        + +++ D       D G ++   
Sbjct: 204 ATFAPNGPFGAALYAGQLENTWRQAYLNLNLA-----QGNWRLDGNLYKTRDTGNASAGA 258

Query: 273 VDADAFGAMFTYKLGGHAFGAGYQQLNGDTGFAYIAGSDNSLVNLVQINDFGNEDERSWQ 332
           +D  A+  +  Y  G  A    YQ++ GDT F ++ G    L N ++  DF    E SWQ
Sbjct: 259 IDTLAYSLLAKYSFGAQALSVAYQKVEGDTPFDFVGGDSIYLANAIKYADFNGPGEHSWQ 318

Query: 333 VRYDYDFAAMGIPGLSLMTRYLSGDNVD------RGAGASE----GKTWERNTDIAYVFQ 382
           +RYD +FA +G PGLSLM RY+SG  +D       GA  ++    GK WER+ D+ YV Q
Sbjct: 319 LRYDLNFATLGAPGLSLMGRYVSGRGIDGSHAPAGGAYVNQYGDGGKHWERDIDLKYVVQ 378

Query: 383 SGPLKNLGLRLRNATTRSN---FGSDLDENRFIVSYSL 417
           SG  K+L L   + + R+N    G D+D    I+ Y L
Sbjct: 379 SGAAKDLSLSFSHVSHRANQAQAGDDIDRIYLIIEYPL 416