Pairwise Alignments

Query, 420 a.a., outer membrane porin, OprD family. from Pseudomonas stutzeri RCH2

Subject, 450 a.a., putative Porin from Pseudomonas putida KT2440

 Score =  205 bits (521), Expect = 3e-57
 Identities = 149/454 (32%), Positives = 202/454 (44%), Gaps = 55/454 (12%)

Query: 8   LCHILCGGAVVIATGPASAAFVEDSKASIDLRNFYMNRDFRSGDGQSKAEEWAQGFMLKM 67
           L  + CG    +A    +  F++DSKASI  R  Y + D RS  G  + +    G  L  
Sbjct: 11  LAALACG---TLAQQGYAVGFLDDSKASISSRTLYYDGDQRSTGGADQRQTLT-GLRLDF 66

Query: 68  ESGYTEGPIGFGVDAIGLLGVKLD--SSPDRVGTGILQSDREAPNRAQDDYGSAGITAKA 125
           +SGYTEG +G G+D   L G  L   +SP    T    S         D++   G  A+ 
Sbjct: 67  QSGYTEGVVGLGLDLQALAGFTLSGGTSPHNASTVNTVSPVTTDGSPVDNWSRIGGNARF 126

Query: 126 KLSATTLHVGTLQPI-LPVVMRNDSRLLPQTYRGAWLQSKEIDGLTLDLGKLDRVNQRNS 184
           K S T L  G      LPV++ ND RLLP +++GA L S E + LTL+ G L+R   R S
Sbjct: 127 KYSKTELKAGNALTFNLPVLISNDGRLLPASFQGAALTSNEFENLTLNGGFLNRAIGRAS 186

Query: 185 SDNEEMTAFNGGRRNIQFGRQTSSDEFLFAGARYAWSPELSTSYYYGGLDGIYKEHNFGL 244
           S+             I  G    SD F FAG  +     L   YYY  L+  Y ++  GL
Sbjct: 187 SN----------WAGISGGGAKGSDGFAFAGGDWNVRKNLKLQYYYANLEDYYSQNFLGL 236

Query: 245 VHVLPLGDKQSFKSDLRYVHQTDDG----------------GSNVDADAFGAMFTYKLGG 288
           +H   +G  QS  +DLRY     DG                   +D   +   FTYK GG
Sbjct: 237 IHSFDMGVGQSLTTDLRYFKSDSDGKNGTDSRYALRNGYNENGKIDNTTWSLAFTYKAGG 296

Query: 289 HAFGAGYQQLNGDTGFAYIAGSD----------------NSLVNLVQINDFGNEDERSWQ 332
           HA   G+QQ++  +GFA +  S+                  L   V +N F    E S  
Sbjct: 297 HALTLGHQQVSDKSGFATVNSSNVVDGRGRPEGEGGVQSLYLYTDVMVNSFTRAGENSTF 356

Query: 333 VRYDYDFAAMGIPGLSLMTRYLSGDNVDRGAGASEGK--TWERNTDIAYVFQSGPLKNLG 390
             Y YDFAA+G+PGL     Y+SG ++      + G+   WE +  + YV QSG  K LG
Sbjct: 357 GLYSYDFAALGVPGLKAGWTYVSGKDIRGTGNTTTGRYNEWESDYRLDYVLQSGTFKGLG 416

Query: 391 LRLRNATTRSNFG----SDLDENRFIVSYSLPLW 420
             LR    R+        D D+ RF V+Y+  LW
Sbjct: 417 FTLRKGVFRTGLPDSTLKDQDQVRFFVNYTYALW 450