Pairwise Alignments

Query, 420 a.a., outer membrane porin, OprD family. from Pseudomonas stutzeri RCH2

Subject, 430 a.a., porin-like protein from Pseudomonas putida KT2440

 Score =  303 bits (777), Expect = 5e-87
 Identities = 169/416 (40%), Positives = 248/416 (59%), Gaps = 12/416 (2%)

Query: 13  CGGAVVIATGPAS-AAFVEDSKASIDLRNFYMNRDFRSGDG---QSKAEEWAQGFMLKME 68
           C  A + A   A  A F+E ++A++  RN++ +RD+    G   QS+ +EWAQGF+L   
Sbjct: 19  CIAAALCAEATAEEAGFIEGARATLQARNYFFSRDYADIKGASTQSRTQEWAQGFILNAS 78

Query: 69  SGYTEGPIGFGVDAIGLLGVKLDSSPDRVGTGILQSDREAPNRAQDDYGSAGITAKAKLS 128
           SGYT+G +G GVD  GLLG KLDSSP+   +G+L S      ++ D+Y   G   K K+S
Sbjct: 79  SGYTQGTLGVGVDVTGLLGFKLDSSPEHARSGLLPSLDSG--KSADEYSRLGAAIKFKVS 136

Query: 129 ATTLHVGTLQPILPVVMRNDSRLLPQTYRGAWLQSKEIDGLTLDLGKLDRVNQRNSSDNE 188
            T L VG L P LPV++ +D RLLP TY+GA L+S+E  GLTL  G+    + R+SS+++
Sbjct: 137 QTELKVGELMPNLPVLLFSDLRLLPPTYQGAMLESREFAGLTLSAGQFRSTSLRDSSNSQ 196

Query: 189 EMTAFNGGRRNIQFGRQTSSDEFLFAGARYAWSPE-LSTSYYYGGLDGIYKEHNFGLVHV 247
           +M A      N     + +SD F + GA YA++    S   +   L+ IY++  +   H 
Sbjct: 197 KMYALVNDPINPARLARFTSDRFNYVGADYAFNDNRTSVGVWQAQLEDIYQQRFYSFKHA 256

Query: 248 LPLGDKQSFKSDLRYVHQTDDGGS---NVDADAFGAMFTYKLGGHAFGAGYQQLNGDTGF 304
            PLG   +   +  Y    +DG     + D  A  ++F+ K GGH F  GYQQ+ GD GF
Sbjct: 257 EPLGS-WTLGVNAGYFDAREDGSKVAGDYDNHALFSLFSAKTGGHTFYVGYQQIGGDDGF 315

Query: 305 AYIAGSDNSLVNLVQINDFGNEDERSWQVRYDYDFAAMGIPGLSLMTRYLSGDNVDRGAG 364
             +  + N + N +   +F    ERSWQVR+DY+F A+G+PGL+   RY+ G +V+ G G
Sbjct: 316 IQVGANTNPMGNTLPTYEFSAPGERSWQVRHDYNFVALGLPGLTSTLRYVKGRDVETGLG 375

Query: 365 ASEGKTWERNTDIAYVFQSGPLKNLGLRLRNATTRSNFGSDLDENRFIVSYSLPLW 420
             EG+  ER+ D+AYV QSGPL  LG+R+RN   RSN+ +D+DENR I+SY++ ++
Sbjct: 376 -FEGRDRERDLDLAYVVQSGPLAGLGIRVRNVMARSNYRTDIDENRLILSYTIKVF 430