Pairwise Alignments

Query, 420 a.a., outer membrane porin, OprD family. from Pseudomonas stutzeri RCH2

Subject, 433 a.a., outer-membrane porin D from Pseudomonas putida KT2440

 Score =  347 bits (889), Expect = e-100
 Identities = 182/423 (43%), Positives = 254/423 (60%), Gaps = 24/423 (5%)

Query: 11  ILCGGAVVIATGPASAAFVEDSKASIDLRNFYMNRDFRSG-----DGQSKAEEWAQGFML 65
           +LC G    A G     F+ED+ A I+ RN Y NRDFR G      G SK EEWAQGF+L
Sbjct: 22  LLCAGVNAQAAG-----FLEDASAKIEARNVYFNRDFRDGYSSSSQGASKREEWAQGFIL 76

Query: 66  KMESGYTEGPIGFGVDAIGLLGVKLDSSPDRVGTGILQSDREAPNRAQDDYGSAGITAKA 125
            ++SGYT+GP+G GVDA+G+ G KLDSSP    +G+L S    P R+ D Y   G+ AK 
Sbjct: 77  NVQSGYTQGPVGVGVDALGMFGFKLDSSPADSNSGLLPSSGHDPRRSADQYAKMGLAAKV 136

Query: 126 KLSATTLHVGTLQPILPVVMRNDSRLLPQTYRGAWLQSKEIDGLTLDLGKLDRVNQRNSS 185
           K+S T L  G++ P +P++  ND RLLP  + GA L S+E+  L   L +LD+   R+S+
Sbjct: 137 KVSNTVLKYGSMMPDVPLLKYNDGRLLPTLFHGAMLTSEELHDLKFTLARLDKYTARDST 196

Query: 186 DNEEMTAFNGGRRNIQFGRQTSSDEFLFAGARYAWSPELSTSYYYGGLDGIYKEHNFGLV 245
           D +++       +N ++   T +D F  AG  Y ++   S  Y    L+ IY++H  GLV
Sbjct: 197 DRQDIRVHC---KNKRYACDTEADHFDLAGVDYRFNERFSAQYQVAKLENIYRQHFLGLV 253

Query: 246 --HVLPLGDKQSFKSDLRYVHQTDDGGSN---VDADAFGAMFTYKLGGHAFGAGYQQLNG 300
               LP+G   S  +D+R +   D G +    +D  AF  M  Y LGGH   AG+Q++ G
Sbjct: 254 ASQPLPVG---SLSADMRLIKSDDIGNARAGEIDHRAFSGMLGYSLGGHKLSAGWQRMYG 310

Query: 301 DTGFAYIAGSDNSLVNLVQINDFGNEDERSWQVRYDYDFAAMGIPGLSLMTRYLSGDNVD 360
           ++   Y+ GS+  LVN  Q+NDF    ERSWQVRYDYDF A+G+PGL+  TRY++GDN+ 
Sbjct: 311 NSAMPYLDGSNPYLVNYAQVNDFAAAQERSWQVRYDYDFKALGVPGLTFFTRYINGDNIK 370

Query: 361 RGAGASEGKTWERNTDIAYVFQSGPLKNLGLRLRNATTRSNF---GSDLDENRFIVSYSL 417
               + EGK WER+T+  Y  QSG  K++ +RLRN+T RSN+     D+DE R IVSY+ 
Sbjct: 371 VPGSSVEGKEWERDTEFKYQVQSGTFKDVSVRLRNSTYRSNYERWARDMDETRVIVSYNF 430

Query: 418 PLW 420
            ++
Sbjct: 431 SIF 433