Pairwise Alignments

Query, 420 a.a., outer membrane porin, OprD family. from Pseudomonas stutzeri RCH2

Subject, 426 a.a., putative Porin from Pseudomonas putida KT2440

 Score =  317 bits (812), Expect = 4e-91
 Identities = 175/416 (42%), Positives = 243/416 (58%), Gaps = 21/416 (5%)

Query: 16  AVVIATGPASAAFVEDSKASIDLRNFYMNRDFRSGDG-QSKAEEWAQGFMLKMESGYTEG 74
           A+  A   A AAF+ D   S++LRNFY +RDF      QS+  EWAQGFML+++SGYT+G
Sbjct: 14  ALYCACQTAQAAFIHDGSGSLELRNFYFDRDFHGDSATQSRRGEWAQGFMLRLQSGYTDG 73

Query: 75  PIGFGVDAIGLLGVKLDSSPDRVGTGILQSDREAPNRAQDDYGSAGITAKAKLSATTLHV 134
            +GFG+DA G+LG+KLDSSPDR G+G+L   R +  RA DDY  A  T KA+L+ + L  
Sbjct: 74  VVGFGLDAAGMLGLKLDSSPDRSGSGLLP--RGSDKRAADDYAKAVATFKARLAQSELKA 131

Query: 135 GTLQPILPVVMRNDSRLLPQTYRGAWLQSKEIDGLTLDLGKLDRVNQRNSSDNEEMTAFN 194
           G L P LP++  N SRL PQ + G  L SK++D  T  L ++D    R+S+D E++TA  
Sbjct: 132 GGLSPQLPLLASNSSRLFPQWFNGVQLVSKDLDRFTFTLLQVDATKLRDSTDYEDLTAM- 190

Query: 195 GGRRNIQFGRQTSSDEFLFAGARYAWSPELSTSYYYGGLDGIYKEHNFGLVHVLPLGDKQ 254
              +   +    +SD   +AG  Y     L+ S +   L+ +++    G      LG   
Sbjct: 191 --AQQGAYSATVTSDRLRYAGVDYQPLNNLTLSLHTSVLEDLFRRDFAGFKFKTRLGPGD 248

Query: 255 SFKSDLRYVHQTDDGGS---NVDADAFGAMFTYKLGGHAFGAGYQQLNGDTGFAYIAGSD 311
            F ++ R+ +  + G +    VD       F Y + GH F  GYQ++ GDT +AY+ G+D
Sbjct: 249 VF-TEWRWFNAREQGRALLGGVDNQTLSTNFGYSVQGHTFSGGYQKVRGDTAYAYVGGTD 307

Query: 312 NSLVNLVQINDFGNEDERSWQVRYDYDFAAMGIPGLSLMTRYLSGDNVD----------- 360
             L +  Q++ F   +ER+W +RYDY+FAA+GIPGL+   RY+ GD VD           
Sbjct: 308 TYLFSEQQVSTFALANERAWMLRYDYNFAAVGIPGLTFNVRYVKGDQVDPQRIASVKGRA 367

Query: 361 RGAGASEGKTWERNTDIAYVFQSGPLKNLGLRLRNATTRSNFGSDLDENRFIVSYS 416
             AG  EG+ WER TDI YV QSG L+N+ LR RNA+ RSNF    DENR IV Y+
Sbjct: 368 LAAGDGEGREWERTTDITYVVQSGALRNVSLRWRNASMRSNFADAADENRVIVGYT 423