Pairwise Alignments

Query, 420 a.a., outer membrane porin, OprD family. from Pseudomonas stutzeri RCH2

Subject, 417 a.a., phenylacetic acid-specific porin from Pseudomonas putida KT2440

 Score =  365 bits (936), Expect = e-105
 Identities = 201/413 (48%), Positives = 261/413 (63%), Gaps = 23/413 (5%)

Query: 16  AVVIATGPASAAFVEDSKASIDLRNFYMNRDFRSGDG-QSKAEEWAQGFMLKMESGYTEG 74
           A V    PA A F+ DS A ++LRN Y+NRDFR  +  Q+KAEEW QGF  K+ESG+TEG
Sbjct: 20  ATVALPMPALADFIGDSHARLELRNHYINRDFRQSNAPQAKAEEWGQGFTAKLESGFTEG 79

Query: 75  PIGFGVDAIGLLGVKLDSSPDRVGTGILQSDREAPNRAQ--DDYGSAGITAKAKLSATTL 132
           P+GFGVDA+G LG+KLDSS DR  TG+L      PN  +  DDY   G+T K ++S +TL
Sbjct: 80  PVGFGVDALGQLGIKLDSSRDRRNTGLLPF---GPNSHEPVDDYSELGLTGKVRVSKSTL 136

Query: 133 HVGTLQPILPVVMRNDSRLLPQTYRGAWLQSKEIDGLTLDLGKLDRVNQRNSSDNEEMTA 192
            +GTLQPILPVV+ ND+RLL  +++G  L S+++DGLT + G+L + N R+SS       
Sbjct: 137 RLGTLQPILPVVVYNDTRLLASSFQGGLLTSQDLDGLTFNAGRLTKANLRDSS------- 189

Query: 193 FNGGRRNIQFGRQTSSDEFLFAGARYAWSPELSTSYYYGGLDGIYKEHNFGLVHVLPLGD 252
              GR +I +G   SSD   F G  YA +P+ + SYYY  L  IY++   GL+   PL +
Sbjct: 190 ---GRDDIGYGA-ASSDHLDFGGGSYAITPQTTVSYYYAKLQDIYRQQFVGLIDTRPLAE 245

Query: 253 KQSFKSDLRYVHQTDDGGS---NVDADAFGAMFTYKLGGHAFGAGYQQLNGDTGFAYIAG 309
             S +SDLRY    +DG     N+D   F AMFT  +  H F A +QQ++GD+ F ++ G
Sbjct: 246 GVSLRSDLRYFDSRNDGAERAGNIDNRNFNAMFTLGVRAHKFTATWQQMSGDSAFPFVNG 305

Query: 310 SDNSLVNLVQINDFGNEDERSWQVRYDYDFAAMGIPGLSLMTRYLSGDNVDRGAGASEGK 369
            D   VNLV  N F      SWQVRYDYDF AMGIPGLS MTRY  G + +  A  + G+
Sbjct: 306 GDPFTVNLVTYNTFTRAGLDSWQVRYDYDFVAMGIPGLSFMTRYTDGRHAET-ATVTNGR 364

Query: 370 TWERNTDIAYVFQSGPLKNLGLRLRNATTRSNFG--SDLDENRFIVSYSLPLW 420
             ER+TDI YV QSGP K++ LR RN T RS  G  + +DENR I+ Y+L LW
Sbjct: 365 ERERDTDITYVIQSGPFKDVSLRWRNVTFRSGNGLTNAVDENRLIIGYTLALW 417