Pairwise Alignments

Query, 420 a.a., outer membrane porin, OprD family. from Pseudomonas stutzeri RCH2

Subject, 417 a.a., putative Porin from Pseudomonas putida KT2440

 Score =  345 bits (886), Expect = 1e-99
 Identities = 197/425 (46%), Positives = 256/425 (60%), Gaps = 31/425 (7%)

Query: 9   CHILCGGAVVIATGPASAAFVEDSKASIDLRNFYMNRDFRSGDGQS-------KAE--EW 59
           C +LCG   V      +A F+EDSK  + LRN Y N +FR   G S       K+E  EW
Sbjct: 11  CGLLCGWLPVAG----AAGFIEDSKLKLQLRNVYFNENFRDEQGMSARAAATAKSERVEW 66

Query: 60  AQGFMLKMESGYTEGPIGFGVDAIGLLGVKLDSSPDRVGTGILQSDREAPNRAQDDYGSA 119
           AQGF+L  +SG+T+G +G GVDA+GLLGV+LDS   R GTG+L    +   RA D++ SA
Sbjct: 67  AQGFLLDYQSGFTQGTLGLGVDAMGLLGVRLDSGRGRSGTGLLPVHDDG--RAADEFASA 124

Query: 120 GITAKAKLSATTLHVGTLQPILPVVMRNDSRLLPQTYRGAWLQSKEIDGLTLDLGKLDRV 179
           GITAKA+L +T +  GTL P  PV++ ND+RLLPQTY+G  L S +ID LTL  G LDR 
Sbjct: 125 GITAKARLGSTVVKHGTLLPKTPVLVYNDARLLPQTYQGTQLTSTDIDNLTLTAGHLDRF 184

Query: 180 NQRNSSDNEEMTAFNGGRRNIQFGRQTSSDEFLFAGARYAWSPELSTSYYYGGLDGIYKE 239
            QR+SSD+  +     G          +S +F FAGA YA S +L  SY++G L+  Y++
Sbjct: 185 KQRDSSDSTGLYLDGYGG--------PASGDFSFAGADYAVSKQLRLSYFHGELEHFYRQ 236

Query: 240 HNFGLVHVLPLGDKQSFKSDLRYVHQTDDG---GSNVDADAFGAMFTYKLGGHAFGAGYQ 296
              GLVH LPLG      +DLRY    D G   G  +D D F    +Y   GH  GAGYQ
Sbjct: 237 DFAGLVHDLPLGGGV-LTTDLRYFKSRDSGTAYGGGIDNDMFSGQLSYAHSGHTVGAGYQ 295

Query: 297 QLNGDTGFAYIAGSDNSLVNLVQINDFGNEDERSWQVRYDYDFAAMGIPGLSLMTRYLSG 356
            L+G+ G  YI+G+     + V I  F  E+E++W   Y Y+FAA G+PGL+ MTRYLSG
Sbjct: 296 VLDGEAGLPYISGATVYSFSNVGIGKFIEEEEKTWMASYAYNFAAAGVPGLTFMTRYLSG 355

Query: 357 DNVDRGAGASEG-KTWERNTDIAYVFQSGPLKNLGLRLRNATTRSNFGSDLDENRFIVSY 415
           DN   G    EG K WER+ +IAYV Q GPLK LG++LRN   RS+F    D NR  ++Y
Sbjct: 356 DN---GRSGGEGIKEWERDAEIAYVVQGGPLKGLGVKLRNYVYRSDFARGRDSNRLYLTY 412

Query: 416 SLPLW 420
            + +W
Sbjct: 413 DIAIW 417