Pairwise Alignments

Query, 420 a.a., outer membrane porin, OprD family. from Pseudomonas stutzeri RCH2

Subject, 421 a.a., basic-amino-acid specific porin OprD from Pseudomonas putida KT2440

 Score =  270 bits (690), Expect = 6e-77
 Identities = 160/411 (38%), Positives = 220/411 (53%), Gaps = 35/411 (8%)

Query: 25  SAAFVEDSKASIDLRNFYMNRDFRSGDG-QSKAEEWAQGFMLKMESGYTEGPIGFGVDAI 83
           S  F+EDSK S+  R  Y +RDFR+ +G QS+ EE   GF+   ESG+T+G +G GVDAI
Sbjct: 29  SKGFIEDSKLSVKTRMLYFSRDFRNNEGGQSRREETGLGFVGTFESGFTQGTVGVGVDAI 88

Query: 84  GLLGVKLDSSPDRVGTGILQSDREAPNRAQDDYGSAGITAKAKLSATTLHVGTLQPILPV 143
           G+LG+KLDS   R GTG+  +  +   R+QDDY   G   K ++S T L VG     LPV
Sbjct: 89  GMLGLKLDSGKGRAGTGLFPTGSDG--RSQDDYSKGGGAVKFRISDTVLKVGDQFTALPV 146

Query: 144 VMRNDSRLLPQTYRGAWLQSKEIDGLTLDLGKLDRVNQRNSSDNEEMTAFNGGRRNIQFG 203
              +DSRLLP+  +G  + S EI+GLTL  G    +  +  ++ +             FG
Sbjct: 147 FATDDSRLLPEIAQGTLITSNEIEGLTLHAGHFTSLTAQEQTNRDS------------FG 194

Query: 204 RQTSSDEFLFAGARYAWSPELSTSYYYGGLDGIYKEHNFGLVHVLPLGDKQSFKSDLRYV 263
            + ++      G  YA++  LSTS YY  ++  ++++   +   LP+ D Q    D    
Sbjct: 195 LKEAN----VVGGTYAFTDNLSTSLYYSKVEDYWRKYYANVNWALPISDNQGLVFDFNIY 250

Query: 264 HQTDDG--------GSNVDADAFGAMFTYKLGGHAFGAGYQQLNGDTGFAY--IAGSDNS 313
               +G        G  +D  AF     Y +G H F   YQ++ GD  + Y    G    
Sbjct: 251 DTKSEGSAEYRAFDGDKLDNRAFSLSGAYNIGAHTFTLAYQKVTGDGDYGYGIDGGGTIF 310

Query: 314 LVNLVQINDFGNEDERSWQVRYDYDFAAMGIPGLSLMTRYLSGDNVDRGAGASEGKTWER 373
           L N V  +DF  EDE+SWQ RYD +FA  GIPGL+ MTRY+ G + +  AG S GK WER
Sbjct: 311 LANSVARSDFNAEDEKSWQARYDLNFAEYGIPGLTFMTRYVRGSDAN-VAGTSNGKEWER 369

Query: 374 NTDIAYVFQSGPLKNLGLRLRNATTRSNFG-----SDLDENRFIVSYSLPL 419
           + DI YV Q GP K+L  R+R AT RS+ G       +DE R IV Y L +
Sbjct: 370 DVDIKYVLQEGPAKDLSFRVRQATYRSSDGVYYDSPSIDELRLIVEYPLSI 420