Pairwise Alignments

Query, 420 a.a., outer membrane porin, OprD family. from Pseudomonas stutzeri RCH2

Subject, 412 a.a., porin-like protein from Pseudomonas putida KT2440

 Score =  294 bits (752), Expect = 4e-84
 Identities = 173/424 (40%), Positives = 245/424 (57%), Gaps = 27/424 (6%)

Query: 8   LCHIL---CGGAVVIATGPAS---AAFVEDSKASIDLRNFYMNRDFRS-GDGQSKAEEWA 60
           +CH L     GA VIA  P +   A FVED KA++ LRNFY+NR+F +  + QSKAEEW 
Sbjct: 3   ICHTLPFALLGAGVIAGLPGTSLAAGFVEDGKATLGLRNFYINRNFTNPSNPQSKAEEWT 62

Query: 61  QGFMLKMESGYTEGPIGFGVDAIGLLGVKLDSSPDRVGTGILQSDREAPNRAQDDYGSAG 120
           Q F+L   SG+TEGPIGFGVD +GL  VKLD      GT +L   R    R  DDYG   
Sbjct: 63  QSFILDARSGFTEGPIGFGVDVLGLWSVKLDGGGGTYGTALLP--RHDDGRPADDYGRLA 120

Query: 121 ITAKAKLSATTLHVGTLQPILPVVMRNDSRLLPQTYRGAWLQSKEIDGLTLDLGKLDRVN 180
           +  KA++S T L +G   P+LP++  +D R LPQT+RG  + S EI GLTL  G+    +
Sbjct: 121 VAGKARISKTELKIGEWMPVLPILRSDDGRSLPQTFRGGQVTSNEIAGLTLYGGQFRGNS 180

Query: 181 QRNSSDNEEMTAFNGGRRNIQFGRQTSSDEFLFAGARYAWSPELS-TSYYYGGLDGIYKE 239
            RN +  E+M+ + GG           SD F F G  Y ++ + +    +   L  +Y++
Sbjct: 181 PRNDASMEDMS-YGGG----------VSDRFNFVGGEYKFNQDRTQVGLWNAVLKDVYQQ 229

Query: 240 HNFGLVHVLPLGDKQSFKSDLRYVHQTDDGGSN---VDADAFGAMFTYKLGGHAFGAGYQ 296
               L H  P+GD  +  ++L Y H  +DG      +D   +  MF+ K GG  F  G Q
Sbjct: 230 QYLQLSHSQPVGD-WTLGANLGYFHGDEDGSERAGQLDNKTYSGMFSAKYGGSTFWVGLQ 288

Query: 297 QLNGDTGFAYIAGSDNSLVNLVQINDFGNEDERSWQVRYDYDFAAMGIPGLSLMTRYLSG 356
           +++GDT       S  +L N    + F N +ERSWQVR+D++F  +G+PGL+LM RY+SG
Sbjct: 289 KVDGDTWMRVNGTSGGTLANDSYNSSFDNANERSWQVRHDFNFVTVGVPGLTLMNRYISG 348

Query: 357 DNVDRGAGASEGKTWERNTDIAYVFQSGPLKNLGLRLRNATTRSNF-GSDLDENRFIVSY 415
            +V  G G ++GK W R T++AYV QSG  K+L ++ RN++ R ++  ++ DENR I +Y
Sbjct: 349 RDVHSG-GVTDGKEWVRETELAYVIQSGAFKDLSVKWRNSSIRRDYSNNEFDENRLIFNY 407

Query: 416 SLPL 419
            L L
Sbjct: 408 PLSL 411