Pairwise Alignments

Query, 348 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Azospirillum brasilense Sp245

Subject, 341 a.a., Polyamine ABC transporter, periplasmic polyamine-binding protein from Pseudomonas putida KT2440

 Score =  222 bits (566), Expect = 1e-62
 Identities = 139/350 (39%), Positives = 192/350 (54%), Gaps = 13/350 (3%)

Query: 1   MSKLKVAVGFLATFTAGVALATAAQARDLTVVSWGGAYQEAQKKVYFEPFKKAGTPMNDE 60
           +SK   AV   +  T     A AA +  L  VSWGG  Q+AQK+ +  PF KA      +
Sbjct: 3   LSKRVTAVLSASLLTLACQAALAADS--LNFVSWGGTTQDAQKEAWAVPFTKATNIKVVQ 60

Query: 61  SWDGGVGVLRAKVQGGAATWDVVQVESEELAIGCEEGLFETMEFNRIGGEQAYLPQTVDA 120
                 G L+A V+ G   WDVV VE++       EGL E ++FN+I  ++   P+ V  
Sbjct: 61  DGPTDYGKLKAMVESGNVQWDVVDVEADFALRAASEGLLEPLDFNQIKRDKID-PRFVSD 119

Query: 121 CGVGAIVYDFVLGYDKDKI-KDAPKSWADFFDTTKFPGKRGL-RQGAKTTLEIALMADGV 178
            GVG+  + FVLGY++ K+  + P  W   FDT  +PGKR L +  +   LE+AL+ADGV
Sbjct: 120 HGVGSFFFSFVLGYNEGKLGANKPVDWTALFDTKAYPGKRALYKWPSPGVLELALLADGV 179

Query: 179 APKDVYKVLGTEEGLERAFKKLDTIKNDIVWWKAGAQPPQLLASGEVAMTSVYNGRIDAA 238
           AP  +Y +      L+RAFKKLDTIK DIVWW  GAQ  QLLASGE ++   +NGR+ A 
Sbjct: 180 APDKLYPL-----DLDRAFKKLDTIKQDIVWWGGGAQSQQLLASGEASLGQFWNGRVYAL 234

Query: 239 NKAEKKNFGMVWNGALYTIDSWVILKGSPNKEAAYKFLDFVGKAENQAKLSENIAYGTSN 298
            + +    G+ W   L   D  VI KG+ NKEAA KFL     AE QA+ +   AY   N
Sbjct: 235 QQ-DGAPVGVSWKQNLVMADFLVIPKGAKNKEAAMKFLANASSAEGQAEFANKTAYAPVN 293

Query: 299 KDAPSKLAPAVLTDLPTAPDNMKNAVEISVPFWLENLDRLTERFNKWAAK 348
            D+ +KL   +  +LPTA    ++ V +   +W +N   +  R+N+W  K
Sbjct: 294 VDSVAKLDKDLAPNLPTA--YAQDQVTLDFAYWAKNGQAIAARWNEWLVK 341