Pairwise Alignments

Query, 349 a.a., Geranylgeranyl diphosphate synthase from Xanthobacter sp. DMC5

Subject, 317 a.a., polyprenyl synthetase family protein from Methanococcus maripaludis S2

 Score = 90.1 bits (222), Expect = 7e-23
 Identities = 66/209 (31%), Positives = 104/209 (49%), Gaps = 9/209 (4%)

Query: 83  LHAAMRHILLAPGKRLRPLLVMAAAMQLDASEHAVLDFGCALEMIHASSLIIDDLPCMDD 142
           L+ A +H+LLA GKR+RP L +   +        ++    ++E+IH  +L+ DD+  MD+
Sbjct: 25  LYGASKHLLLAGGKRVRPYLSILTYLLKKDELTEIMAPALSVELIHNYTLVHDDI--MDN 82

Query: 143 AMVRRAQPTTHVKYGEDVAVLAAVALLSRSL-GVAGAAPGTSDHVRLDAVCILSKAVGSL 201
              RR  PT H  YGE +A+LA   L +++   ++        H   + + +LSKA   +
Sbjct: 83  DDQRRGIPTVHTVYGEPIAILAGDLLYAKAFEALSNIEDSNKAH---EVLKVLSKAC--V 137

Query: 202 GLCGGQYDDLR-PSPGRSLAATEDVNRRKTGVLFSAAVEIAGRAAAADEAQAGHLRALAG 260
            +C GQ +D+       +L    ++  +KTG L  A VEI    A     +   L   A 
Sbjct: 138 EVCEGQTEDMEFEERFPTLDEYLEMISKKTGALIVAPVEIGAVMADCTPEEREALCNYAK 197

Query: 261 HVGSAYQILDDILDNSGSAAALGKDVGKD 289
            +G  +QI DD+LD  G    +GK VG D
Sbjct: 198 RIGMTFQIQDDVLDLIGDQKTIGKPVGSD 226