Pairwise Alignments

Query, 907 a.a., DNA topoisomerase 1 from Xanthobacter sp. DMC5

Subject, 187 a.a., DNA topoisomerase type IA Zn finger domain-containing protein (RefSeq) from Shewanella loihica PV-4

 Score = 61.6 bits (148), Expect = 4e-14
 Identities = 34/72 (47%), Positives = 46/72 (63%), Gaps = 6/72 (8%)

Query: 616 LCPTCGTGRLSLKMGKFGAFIGCSNYPECRHTRPLTGDNPQEGDGTRVL-GLD-PDSGEE 673
           LCP CG   LS+K  K G FIGC+NYP C +TRPL      E   T+V+ G + P+ G E
Sbjct: 22  LCPKCGC-ELSVKNSKHGGFIGCNNYPCCDYTRPLV---HHESIETQVIEGSECPECGAE 77

Query: 674 VTIRSGRFGTYL 685
           + ++SGRFG ++
Sbjct: 78  LAVKSGRFGIFI 89



 Score = 48.9 bits (115), Expect = 3e-10
 Identities = 19/41 (46%), Positives = 27/41 (65%), Gaps = 1/41 (2%)

Query: 617 CPTCGTGRLSLKMGKFGAFIGCSNYPECRHTRPLTGDNPQE 657
           CP CG   L++K G+FG FIGC+ YP+C+H      ++P E
Sbjct: 71  CPECGA-ELAVKSGRFGIFIGCTRYPDCKHIEKQDQEDPAE 110



 Score = 34.7 bits (78), Expect = 5e-06
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 608 REDGTDPRLCPTCGTGRLSLKMGKFG-AFIGCSNYPECR 645
           +ED  +   CP+C  G +  +  +FG +F  CS YP+C+
Sbjct: 105 QEDPAEAVTCPSCHKGVMEHRTSRFGKSFYACSAYPKCK 143



 Score = 28.1 bits (61), Expect = 5e-04
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 6/46 (13%)

Query: 605 FPPREDGTDPRLCPTCGTGRLSLKMGKFGAFIGCSNYPECRHTRPL 650
           +PP ++      CP CG G L  + G  G  + C     C++ RPL
Sbjct: 148 YPPVQEA-----CPDCGFGILVERKGAAGMRLECPQ-KSCKYKRPL 187