Pairwise Alignments

Query, 1394 a.a., DNA-directed RNA polymerase subunit beta' from Xanthobacter sp. DMC5

Subject, 1401 a.a., DNA-directed RNA polymerase subunit beta' from Vibrio cholerae E7946 ATCC 55056

 Score = 1613 bits (4177), Expect = 0.0
 Identities = 815/1365 (59%), Positives = 1040/1365 (76%), Gaps = 17/1365 (1%)

Query: 3    QEILNVFNPTVPAPSFNQIRISIASPEKIKSWSYGEIKKPETINYRTFKPERDGLFCARI 62
            +++LN          F+ I+I +ASP+ I+SWS+GE+KKPETINYRTFKPERDGLFCARI
Sbjct: 2    KDLLNFLKAQHKTEEFDAIKIGLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARI 61

Query: 63   FGPIKDYECLCGKYKRMKYKGIICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFLKSLP 122
            FGP+KDYECLCGKYKR+K++G+ICEKCGVEVT ++VRR+RMGHIELA+PVAHIWFLKSLP
Sbjct: 62   FGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRDRMGHIELASPVAHIWFLKSLP 121

Query: 123  SRIGLLLDMTLKDLERILYFEYFVVIEPGITKLKYRQLLSEDDYLRAQDEYGESSFTAMI 182
            SRIGLL+DM L+D+ER+LYFE +VV EPG+T L+  Q+L+E++YL   +E+G+  FTA +
Sbjct: 122  SRIGLLMDMPLRDIERVLYFEMYVVTEPGMTDLERGQMLTEEEYLDRLEEWGDE-FTAKM 180

Query: 183  GAEAIRELLRSMDLEKIAADLRQEIAEATTELKPKKLAKRLKIVEAFQLSGNKPEWMILT 242
            GAEAI++LL SMDL   A  +R+E+    +E K KKL KRLK+VEAF  SGNKPEWMILT
Sbjct: 181  GAEAIKDLLASMDLPAEAEQMREELDTTNSETKRKKLTKRLKLVEAFVASGNKPEWMILT 240

Query: 243  HVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIIRNEKRMLQ 302
             +PV+PPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRL+EL APDII+RNEKRMLQ
Sbjct: 241  VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELAAPDIIVRNEKRMLQ 300

Query: 303  EAVDALFDNGRRGRVITGANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPE 362
            E+VDAL DNGRRGR ITG+NKRPLKSLADM+KGKQGRFRQNLLGKRVDYSGRSVI VGP 
Sbjct: 301  ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY 360

Query: 363  LKLHQCGLPKKMALELFKPFIYSRLDAKGHSATVKQAKKLVEKERPEVWDILDEVIREHP 422
            L+LHQCGLPKKMALELFKPFIYS+L+ +G + T+K AKK+VE+E   VWDILDEVIREHP
Sbjct: 361  LRLHQCGLPKKMALELFKPFIYSKLETRGLATTIKAAKKMVEREEAVVWDILDEVIREHP 420

Query: 423  VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQLEA 482
            V+LNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVC+A+NADFDGDQMAVHVPL+LEAQLEA
Sbjct: 421  VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA 480

Query: 483  RVLMMSTNNILHPANGQPIIVPSQDIVLGLYYLSIMKEKEPGEGMMFANMAEIDHALNAK 542
            R LMMSTNNIL PA+G PIIVPSQD+VLGLYY++  K    GEGM     AE + A   K
Sbjct: 481  RTLMMSTNNILSPASGDPIIVPSQDVVLGLYYMTREKINAKGEGMYLTGPAEAEKAYRTK 540

Query: 543  AITLATKIKGRYIGI--GPDGK--QYSKIYETTPGRMKIGELLPKDPKLSYDVVNKLMTK 598
               L  ++K R        +GK    +K+ +TT GR  + +++PK   L Y +VN+ + K
Sbjct: 541  TAELHARVKVRITETIKHENGKLTTETKMIDTTVGRAMLWQIVPKG--LPYSLVNQKLGK 598

Query: 599  KEISNMIDAVYRHCGQKESVIFCDRIMALGFYNAFRAGISFGKDDMVVPKKKWELVEETR 658
            K+ISN+++  YR  G K++VIF D+IM  GF  A  +G+S G DDMVVP  K+  + E  
Sbjct: 599  KQISNLLNEAYRKLGLKDTVIFADQIMYTGFAYAALSGVSVGIDDMVVPAAKYTEIAEAE 658

Query: 659  ALTKEYEQQYNDGLITQGEKYNKVVDAWGKCSDRVAEEMMKEISS---VKKDPKTGREKQ 715
               +E ++Q+  GL+T GE+YNKV+D W   +DRVA+ MM+ +SS   + +  +  +++ 
Sbjct: 659  EEVREIQEQFQSGLVTAGERYNKVIDIWASTNDRVAKAMMENLSSEQVINRQGEQEKQES 718

Query: 716  INSIYMMSHSGARGSPAQMKQLAGMRGLMAKPSGEIIESPIISNFKEGLTVMEYFNSTHG 775
             NSIYMM+ SGARGS AQ++QLAGMRGLMA+P G IIE+PI +NFKEGL V++YF STHG
Sbjct: 719  FNSIYMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFKEGLNVLQYFISTHG 778

Query: 776  ARKGLADTALKTANSGYLTRRLVDVAQDSIITERDCGSEKGIHMRAIIDAGQIVASLASR 835
            ARKGLADTALKTANSGYLTRRLVDVAQD ++TE DCG+ +G+ M   I+ G +  +L   
Sbjct: 779  ARKGLADTALKTANSGYLTRRLVDVAQDVVVTEHDCGTLEGVVMTPHIEGGDVKVALTEL 838

Query: 836  VLGRTAAEDIVEPATGDVIVPKGQMIEEPHVERINKSGIQEIKIRSVLTCETRNGVCGTC 895
             LGR  +EDI++P T +V++P+  +++E   + IN + + +IK+RSV+TC++  G C  C
Sbjct: 839  ALGRVVSEDILKPGTDEVLIPRNTLLDEKWCKVINDNSVDQIKVRSVVTCDSDFGCCAQC 898

Query: 896  YGRDLARGTPVNMGEAVGVIAAQSIGEPGTQLTMRTFHIGGAA-TLADSSFVESNFEGTV 954
            YGRDLARG  VN GEAVGVIAAQSIGEPGTQLTMRTFHIGGAA T A  + +++   G+V
Sbjct: 899  YGRDLARGHLVNQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASTAAAENSIQAKNNGSV 958

Query: 955  RIRNRNVARNSDGDLVVMARNLAVVIVDHDGTERAVNRVQYGARLKVDEGDTIKRGQRIA 1014
            ++ N     N DG LV+ +R   + I+D  G  +  +++ YG+ L   +GD +  G+ +A
Sbjct: 959  KLHNAKFVTNKDGKLVITSRASELTIIDEFGRTKEKHKLPYGSMLSKADGDAVAAGETVA 1018

Query: 1015 EWDPYTRPILSEVDGTVAFEDLMEGSSMNEQVDESTGIAKRVVTD--SRSGRGPELRPAI 1072
             W+ +T PI++EV G V F D+++G +++ Q D+ TG++   VT+  +R   G ++RPAI
Sbjct: 1019 NWEAHTMPIITEVAGRVQFVDMIDGVTVSRQTDDLTGLSSSEVTEAAARPAAGKDMRPAI 1078

Query: 1073 LIKGKDGKIIKLPRGGD--ARYALPVEAIISVDPNQTLKAGDAVARVPLESAKTRDITGG 1130
             +   +GK + +P G D  A+Y LP +AI+++D    +  GD +AR+P +S   +DITGG
Sbjct: 1079 KLVDANGKDVLIP-GTDMPAQYFLPGKAIVNLDDGAEVNVGDTLARIPQKSGGNKDITGG 1137

Query: 1131 LPRVAELFEARRPKDAAIIAEISGSIRFGRDYKNKRRLSIEPTDGGDPVEYLIPKGKHIH 1190
            LPRVA+LFEAR+PK+ AI+AE SG++ FG++ K KRRL I   D GD  E +IPK + ++
Sbjct: 1138 LPRVADLFEARKPKEPAILAEHSGTVSFGKETKGKRRLII-TRDSGDTYEEMIPKHRQLN 1196

Query: 1191 LQDGDVVEKGDFIVDGNPAPHDILAIKGVEELAAFLVNEIQEVYRLQGVHINDKHIEVIV 1250
            + +G+ +E+GD I DG  +PHDIL ++G+  +  ++ NE+QEVYRLQGV INDKHIE IV
Sbjct: 1197 VFEGERIERGDVIADGPESPHDILRLRGIHAVTTYIANEVQEVYRLQGVKINDKHIETIV 1256

Query: 1251 RNMLQKVEIDDSGETDFLDNEQVDRLEFLEANEKAAEEGKKPATGHPVLLGITKASLQTR 1310
            R ML+K  I  +G+++FL  E V+  +   AN K  EEGK+PA     LLGITKASL T 
Sbjct: 1257 RQMLRKCTITFAGDSEFLPGETVEYSQVKIANRKLVEEGKEPARFERELLGITKASLATE 1316

Query: 1311 SFFSAASFQETTRVLTEAAVNGKIDPLEGLKENVIVGRLIPAGTG 1355
            SF SAASFQETTRVLTEAAV+GK D L GLKENVIVGRLIPAGTG
Sbjct: 1317 SFISAASFQETTRVLTEAAVSGKRDDLRGLKENVIVGRLIPAGTG 1361