Pairwise Alignments

Query, 406 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Xanthobacter sp. DMC5

Subject, 465 a.a., 23S rRNA (uracil-5-)-methyltransferase RumA (NCBI) from Rhodospirillum rubrum S1H

 Score =  219 bits (559), Expect = 1e-61
 Identities = 174/449 (38%), Positives = 221/449 (49%), Gaps = 53/449 (11%)

Query: 6   IERMGAQGDGIVRGPSGP---LFAPLTLAGELVR-----GEVEGERIRLDAIIELSPERV 57
           +  +G +GDG+ R  SG     +    L GE VR      + +GE   L+A+IE S ERV
Sbjct: 21  VHALGDRGDGLARPASGGERLFYVAGALPGERVRLRPQGRKGDGEIAELEAVIEASAERV 80

Query: 58  EPECPHFGRCGGCLLQHWESAPYLAWKRQMVVDALSREGI-EADVAPTIDAHGAGRRRVI 116
           +P CPH   CGGC LQH +      WKR  VV AL+  G+    V  T+      RRR+ 
Sbjct: 81  DPPCPHAALCGGCDLQHLDPPALADWKRDKVVRALAHRGLGTVTVDQTLSLPAGTRRRLS 140

Query: 117 FHARQYGARTVVGFAERKSHAMVAIDACPVLAPGLDQALP-AARAVAEALAPLKKPLDLQ 175
              R      V GF  R+SH ++    C +  P L   +    RA+   LAP  +   L 
Sbjct: 141 VGLRGRARHGVCGFFARESHRLIDTPHCLLPTPPLAALMEHLRRALPGFLAPAAEGTAL- 199

Query: 176 LIATDTGLDMDVRGSGPLPPALL--TDLAVIADRFRLARLTR-----HGELVIQREPPRL 228
           +  T+TG+D+  R   P  P L     LA +A+   LARLT        E V  R  P+L
Sbjct: 200 MTETETGIDL--RLDLPTAPELTGREALAALAEDADLARLTLTIAGGSEEPVALRRAPKL 257

Query: 229 AMGRARVDLPPAAFLQATAEGERVLADHVAAG---MVGARKVADLFAGVGTFALRLAETA 285
            +G   V  PP  FLQ + +GER L D V A    +     +ADLF G+GTFAL LA  A
Sbjct: 258 TLGGTPVLPPPGPFLQPSVDGERALTDLVLAAFEDLPAGAVIADLFCGLGTFALPLA--A 315

Query: 286 RVFAAENHAGALAALLKAGHT-PGLKG-VDGEARDLFRRPLMAAELAAFDAVVIDPPRQG 343
           R F         +A+   G T P   G V    RDLFRRPL+A ELA +  VV+DPPR G
Sbjct: 316 RGFKLRGWDIESSAIGALGATAPARAGKVQATTRDLFRRPLVAEELAGWSGVVLDPPRAG 375

Query: 344 AEAQARELA------------------VSRLPR--------LVYVSCNAATFARDAALLV 377
           A+AQ   LA                  V   P         +V VSC  A+FARDA  LV
Sbjct: 376 AKAQVEALAAAGPGPLGAPVRPSILGIVGGAPAAAATGPSVIVLVSCAPASFARDARALV 435

Query: 378 AGGMRLEGVVPVDQFRYSAHVELVATFSR 406
            GG R++ V PVDQF +S HVE+VA FSR
Sbjct: 436 DGGYRIDWVRPVDQFTWSHHVEVVARFSR 464