Pairwise Alignments

Query, 406 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Xanthobacter sp. DMC5

Subject, 460 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Ralstonia solanacearum IBSBF1503

 Score =  136 bits (343), Expect = 1e-36
 Identities = 136/428 (31%), Positives = 196/428 (45%), Gaps = 48/428 (11%)

Query: 20  PSGPLFAPLTLAGELV-----RGEVEGERIRLDAIIELSPERVEPECPHFGRCGGCLLQH 74
           P   +F    L GE V     R +   E+  L  I+  S  RV P+C  FG CGGC +QH
Sbjct: 39  PGKVVFVEGALPGERVTYRSHRAKASYEQASLVDILRPSASRVTPQCKFFGICGGCSMQH 98

Query: 75  WESAPYLAWKRQMVVDALSREG-IEADVA--PTIDAHGAGRRRVIFHARQYGAR--TVVG 129
            +S   LA K++++ D L     +  DV   P        R R     R   A+   +VG
Sbjct: 99  LDSRAQLAIKQRVLEDDLWHLAKLRPDVVFRPIAGPDWGYRYRARLTVRHVAAKGGVLVG 158

Query: 130 FAERKSHAMVAIDACPVLAPGLDQALPAARAVAEALAPLKKPLDLQLIATDTGLDMDVRG 189
           F ERKS  +  + +C VL P +   L   R +   L+ +++   +++        + +R 
Sbjct: 159 FHERKSSYVADMTSCEVLPPHVSALLVPLRELVGRLSIVQRMPQVEVAVGQDVTALVLRI 218

Query: 190 SGPLPPALLTDLAVIADRFRLAR-LTRHGELVIQREPP-----RLAMGRARVDLP--PAA 241
             PL PA   +L   ADR  +   L   G   +    P        +    + +P  P  
Sbjct: 219 LEPLTPADEAELRAFADRHTVQFWLQPKGPDTVYPFYPLDRALTYTLPEFGITMPFKPTD 278

Query: 242 FLQATAEGERVLADHVAAGMVGAR---KVADLFAGVGTFALRLAETARVFAAENHAGALA 298
           F Q   +  RVL   V   ++ AR   ++ DLF G+G F L +A   R       + AL 
Sbjct: 279 FTQVNHQINRVLMSRVLK-LLDARPGDRLLDLFCGIGNFTLPMATRGREVMGIEGSEALT 337

Query: 299 --ALLKAGHTPGLKGVDGEA----RDLFRRPLMAAELAA---FDAVVIDPPRQGAEAQAR 349
             AL  A H     G+D +     R+LF   + A ++AA   FD  ++DPPR+GA A ++
Sbjct: 338 TRALANAQHN----GLDAKTTFACRNLFE--VSADDIAALGRFDRWLVDPPREGALAVSK 391

Query: 350 ELA---------VSRLP-RLVYVSCNAATFARDAALLV-AGGMRLEGVVPVDQFRYSAHV 398
            LA          + LP R+VYVSCN AT ARDA LLV   G RL G   V+ F +++HV
Sbjct: 392 ALAELSQRGGDAAALLPGRIVYVSCNPATLARDAGLLVHEAGYRLSGAGVVNMFPHTSHV 451

Query: 399 ELVATFSR 406
           E +A F R
Sbjct: 452 ESIAVFDR 459