Pairwise Alignments

Query, 406 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Xanthobacter sp. DMC5

Subject, 456 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Rahnella sp. WP5

 Score =  145 bits (365), Expect = 3e-39
 Identities = 124/420 (29%), Positives = 192/420 (45%), Gaps = 31/420 (7%)

Query: 13  GDGIVRGPSGPLFAPLTLAGE-----LVRGEVEGERIRLDAIIELSPERVEPECPHFGRC 67
           G G+ R     +F    L GE     L   + +  + +L  ++  S +RV+P CPH+  C
Sbjct: 28  GQGVARHNGKAVFVSGLLPGEQAEVTLTEDKSKYAKGKLKRLLTTSDDRVKPLCPHYSTC 87

Query: 68  GGCLLQHWESAPYLAWKRQMVVDALSRE-GIEADVAPTIDAHGAGRRRV---------IF 117
           GGC  QH   A     K   ++  +SRE GI AD  P I     G RR          + 
Sbjct: 88  GGCQQQHASEALQQRSKSAALLRLISRETGILADPLPVIAGPQYGYRRRARLGLQIAGVK 147

Query: 118 HARQYGART---VVGFAERKSHAMVAIDACPVLAPGLDQALPAARAVAEALAPLKKPLDL 174
             R+ GA +   V+GF +  S+ +VAI  CPVL P L+Q L   +    +L+  K+   L
Sbjct: 148 PGRKAGAVSGPLVMGFRQEGSNDLVAITKCPVLRPELEQLLVPVQECLSSLSAAKRLGHL 207

Query: 175 QLIATDTGLDMDVRGSGPLPPALLTDLAVIADRFRLARLTRHGELVIQR---EPPRLAMG 231
           +++  D G  + +R   PL  A    L   A + +L          ++    EPP   + 
Sbjct: 208 EMVLADNGPLLVLRHLDPLSEADRARLTAFAAQHQLTIFLAPDSETLEPLCGEPPYYQID 267

Query: 232 RARVDLPPAAFLQAT-AEGERVLADHVA-AGMVGARKVADLFAGVGTFALRLAETA-RVF 288
              +   P  F+Q   A  ++++A  +    +    +V DLF G+G F L LA+ A +V 
Sbjct: 268 GLNLKFGPRDFIQVNDAVNQQMVAQALDWLELTPEDRVLDLFCGMGNFTLPLAKRANQVV 327

Query: 289 AAENHAGALAALLKAGHTPGLKGV----DGEARDLFRRPLMAAELAAFDAVVIDPPRQGA 344
             E  A  +A         GL+ V    +    D+ ++P  A     F+ +++DP R GA
Sbjct: 328 GVEGVATLVANGQDNARNNGLENVSFFHENLEDDVSKQPWAAQ---GFNKILLDPARGGA 384

Query: 345 EAQARELAVSRLPRLVYVSCNAATFARDAALLVAGGMRLEGVVPVDQFRYSAHVELVATF 404
                 +      R+VYVSCN  T ARD+ +L+  G RL GV  +D F ++ H+E +A F
Sbjct: 385 AGVMTHIVKLAPARVVYVSCNPTTLARDSKILLEAGYRLAGVRMLDMFPHTGHLESMALF 444