Pairwise Alignments

Query, 406 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Xanthobacter sp. DMC5

Subject, 479 a.a., RNA methyltransferase, TrmA family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  133 bits (335), Expect = 1e-35
 Identities = 141/472 (29%), Positives = 198/472 (41%), Gaps = 76/472 (16%)

Query: 3   EFRIERMGAQGDGIVRGPSGPLFAPLTLAGELVRGEVEGERIR-----LDAIIELSPERV 57
           E  ++ + A G  + R     +F    L G+ VR  +   + R     LDA++E SP + 
Sbjct: 13  ELTVDALAAGGRAVCRHEGRVVFVAGGLPGQRVRARLTTVKRRFAEATLDAVLEPSPVQC 72

Query: 58  EPECPHFGRCGGCLLQHWESAPYLAWKRQMVVDALSREG--IEADVAPTIDA---HGAGR 112
            P C HFG CGGC  Q    A  L WK + VVDAL R G   +A+V P + +    G   
Sbjct: 73  APFCAHFGDCGGCAWQDLPYAEQLRWKERFVVDALGRIGGLRDANVLPILASPAERGFRN 132

Query: 113 RRVIFHARQYGARTVVGFAERKSHAMVAIDACPVLAPGLDQALPAARAVA-EALAP---- 167
           +     ++    +  +G   R S A+V I  C +  P   + + A R +A E+  P    
Sbjct: 133 KMEFAFSQDRDGQLHLGLRRRASRAVVDITECHLQTPLTVRIVEAVRELARESGLPGWDD 192

Query: 168 -----------LKKPLDLQLIATDTGLDMDVRGSGPLPPALLTDLAVIADRF-------- 208
                      +++P     +  D G D    G G   P     +  I  R         
Sbjct: 193 SRQDGFWRFLVVREP----ELGRDAGADTPAEGEGQDTPGRQCLIQCITGRHPGAAQAVS 248

Query: 209 RLARL--TRHGELV-----IQREPPRLAMGRARVDLPPAAFLQATAEGERVL-------- 253
           RLA     R  E+      ++ +P ++A G   + +   A L     G  +L        
Sbjct: 249 RLAEALRARFPEVTGVVHSLRLDPEQIAYGERVLAVDGEAVLTERLGGNDLLLGPDSFFQ 308

Query: 254 ADHVAAGMV--GARKVA---------DLFAGVGTFALRLAETARVF-------AAENHAG 295
            +  AAG++   AR++A         DL++GVG  AL LA  A           A N A 
Sbjct: 309 TNTAAAGLLYDEARRMAAAGPDDTVWDLYSGVGAIALHLARAAGAVRGFEITPEAVNDAR 368

Query: 296 ALAALLKAGHTPGLKGVDGEARDLFRRPLMAAELAAFDAVVIDPPRQGAEAQARELAVSR 355
           A AA     +      V G+ R   RR     E  +   VV+DPPR G      E   + 
Sbjct: 369 ANAA---RNNILNCSFVSGDVRASLRRE-RPGEGVSPRIVVVDPPRAGLHEDVVEAVSAH 424

Query: 356 LP-RLVYVSCNAATFARDAALLVAGGMRLEGVVPVDQFRYSAHVELVATFSR 406
            P R+VYVSCN AT ARDAAL  A G  L+   PVD F +S HVE VA  +R
Sbjct: 425 QPERIVYVSCNPATMARDAALFTARGYALQEARPVDLFPHSPHVECVALLTR 476