Pairwise Alignments

Query, 406 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Xanthobacter sp. DMC5

Subject, 433 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Escherichia coli Nissle 1917

 Score =  122 bits (307), Expect = 2e-32
 Identities = 114/412 (27%), Positives = 181/412 (43%), Gaps = 26/412 (6%)

Query: 13  GDGIVRGPSGPLFAPLTLAGE-----LVRGEVEGERIRLDAIIELSPERVEPECPHFGRC 67
           G G+ R     LF P  L  E     +   + +  R ++   +  SPER  P CPHFG C
Sbjct: 28  GQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVC 87

Query: 68  GGCLLQHWESAPYLAWKRQMVVDALSREGIEADVAPTIDAHGAGRRRVIFHARQYGARTV 127
           GGC  QH      +  +++    AL+R  ++ +V+  I     G RR    +  Y  +T 
Sbjct: 88  GGCQQQHAS----VDLQQRSKSAALARL-MKHEVSEVIADVPWGYRRRARLSLNYLPKTQ 142

Query: 128 ---VGFAERKSHAMVAIDACPVLAPGLDQALPAARAVAEALAPLKKPLDLQLIATDTGLD 184
              +GF +  S  +V +  CP+L P L+  LP  RA   +L  ++    ++L+   +G  
Sbjct: 143 QLQMGFRKAGSSDIVDVKQCPILVPQLEALLPKVRACLGSLQAMRHLGHVELVQATSGTL 202

Query: 185 MDVRGSGPLPPALLTDLAVIADRFRL-ARLTRHGELV--IQREPPRLAMGRARVDLPPAA 241
           M +R + PL  A    L   +    L   L    E++  +  E P       R+   P  
Sbjct: 203 MILRHTAPLSSADREKLECFSHSEGLDLYLAPDSEILETVSGEMPWYDSNGLRLTFSPRD 262

Query: 242 FLQATAEGERVLADHVAAGM--VGARKVADLFAGVGTFALRLA-ETARVFAAENHAGALA 298
           F+Q  A   + +       +      +V DLF G+G F L LA + A V   E     + 
Sbjct: 263 FIQVNAGVNQKMVARALEWLDVEPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVE 322

Query: 299 ALLKAGHTPGLKGV----DGEARDLFRRPLMAAELAAFDAVVIDPPRQGAEAQARELAVS 354
              +     GL+ V    +    D+ ++P        FD V++DP R GA    +++   
Sbjct: 323 KGQQNARLNGLQNVTFYHENLEEDVTKQPWAKN---GFDKVLLDPARAGAAGVMQQIIKL 379

Query: 355 RLPRLVYVSCNAATFARDAALLVAGGMRLEGVVPVDQFRYSAHVELVATFSR 406
              R+VYVSCN AT ARD+  L+  G  +  +  +D F ++ H+E +  FSR
Sbjct: 380 EPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSR 431