Pairwise Alignments

Query, 424 a.a., Outer membrane efflux protein BepC from Xanthobacter sp. DMC5

Subject, 438 a.a., outer membrane protein TolC from Vibrio cholerae E7946 ATCC 55056

 Score =  105 bits (261), Expect = 4e-27
 Identities = 103/418 (24%), Positives = 179/418 (42%), Gaps = 34/418 (8%)

Query: 2   AYTNNPTLNAQRAGTRATDETVPQALSGYRPTLNATA-------QAGPEFAKQQASGVKT 54
           A  N+P L +  A   A  E V  + S   P +N TA          P  +   ++G+  
Sbjct: 32  AKENDPQLLSVAAQRDAAFEAVTSSRSALLPQINLTAGYNINRSDQAPRESDLLSAGINF 91

Query: 55  NGWLWPRAFALNAAYTLFNGFVTANQTRNAESQVRGSRETLRNTEQSVLLNGVTAYMNVI 114
           +  L+ R+            +V+ +    AE + R +      T+Q ++L    AY  V+
Sbjct: 92  SQELYQRS-----------SWVSLD---TAEKKARQADSQYAATQQGLILRVAKAYFEVL 137

Query: 115 QAIALLELQNKSLAAFQQELRATRDRFNVGEVTRTDVAQAEARVADAQYQVSQAVANLST 174
           +A   LE      AA  ++L  T+ RF VG    TDV  A+A+          A  +L+ 
Sbjct: 138 RAQDNLEFVRAEKAAVGRQLEQTKQRFEVGLSAITDVHDAQAQFDGVLADEVLAENSLTN 197

Query: 175 AKANYRQVIGVEPGKLT---TPRSIEGTLPVSVDKVISTGLSSHPAVKASEFAVDAAMFQ 231
           +    R++ G E  KL    T R        S + +I      + ++ A+  + D A   
Sbjct: 198 SYEALREITGQEYSKLAVLDTKRFAASRTTESSEALIEKAQQQNLSLLAARISQDVARDN 257

Query: 232 VKVAEGGLMPNLSLQGQLSQSYDQNFSVDSQAGAAMT-----LNLSVPIYQGGVEYANIR 286
           + +A  G +P+L+L G  +   + N +  + +G         +NL VP+Y GG   +  +
Sbjct: 258 ISLASSGHLPSLTLDGGYNYGNNSNDNAKNTSGEEYNDFKIGVNLKVPLYTGGNTTSLTK 317

Query: 287 QAKELLTQARIEVDVNRDTIRAQAVQYWGALEAAKAQIQAAQASVAANTLALEGVREEWR 346
           QA+     A  +++    ++      Y   + A+   ++A + +V +   ALE     + 
Sbjct: 318 QAEFAYVAASQDLEAAYRSVVKDVRAYNNNINASIGALRAYEQAVISAKSALEATEAGFD 377

Query: 347 VGQRTTTDVLNAQRDLTNSQSSLVVAQRDRVVAAYALVSTIGRLDA-----LSLGLKV 399
           VG RT  DVL+A R L ++  +L  A+ D +++   L   IG L       ++ GLKV
Sbjct: 378 VGTRTIVDVLDATRRLYDANKNLSNARYDYILSVLQLRQAIGTLSEQDVMDVNAGLKV 435