Pairwise Alignments

Query, 339 a.a., tRNA-dihydrouridine synthase B from Xanthobacter sp. DMC5

Subject, 362 a.a., Dihydrouridine synthase TIM-barrel protein nifR3 (NCBI) from Rhodospirillum rubrum S1H

 Score =  280 bits (716), Expect = 4e-80
 Identities = 151/296 (51%), Positives = 197/296 (66%), Gaps = 7/296 (2%)

Query: 17  VILAPMAGITDAPVRRMAVRHGAGLVISEMLASEALLEGH-----PEMLLRAEGEGVSFH 71
           ++LAPMAG+TD+P RR+A  +G  L  +EM+AS  LL        P +   AE       
Sbjct: 14  IMLAPMAGVTDSPFRRLAHDYGCPLSWTEMVASRELLRERARGVDPRLGGGAEAGRAGPF 73

Query: 72  AVQLAGNDPRLMGEAARVAEATGAGLVDINMGCPAKRVTTGAAGAALLRDLPLARAIFEA 131
           AVQLAG DP +M EAAR  E  GA L+DINMGCP ++V  G  G+AL+RDLPLA  I EA
Sbjct: 74  AVQLAGCDPLIMAEAARRVEGAGAELIDINMGCPVRKVVGGLGGSALMRDLPLAARILEA 133

Query: 132 VRGAVSVPVTVKTRLGWDDGSPTAVALAEMAEACGLSMVTIHGRTRCQFYTGRADWSAIR 191
           V GAV++PV++K RLGWDD S  AV LA +AE+ G+S +T+HGRTR Q Y GRADW AI 
Sbjct: 134 VVGAVTLPVSLKMRLGWDDASRNAVELARLAESAGISRLTVHGRTRAQMYDGRADWPAIG 193

Query: 192 AVKNAVSIPVIANGDVVSLADGPAILAASGADGVMIGRGAQGRPWFPGRVAQALAGRVLE 251
            VK AVS+PVIANGDV +L++   ILA +GADGVMIGR A G PW PG +A+A+A    E
Sbjct: 194 LVKRAVSLPVIANGDVTNLSEAREILAVTGADGVMIGRAALGAPWLPGAIARAIAAGTRE 253

Query: 252 EDPPLDLQRDILLELY-EGWLSLYGTALGVRQARKHIGWALDAAARGQGNARAAFV 306
             PP   +R  ++  + EG L+ +G   G++ +RKH+GW      +G  + RAA++
Sbjct: 254 TPPPALAERAAVMAAHLEGLLACHGLERGLKTSRKHMGWYARTMPQG-ADFRAAYM 308