Pairwise Alignments

Query, 418 a.a., Sensory histidine kinase/phosphatase NtrB from Xanthobacter sp. DMC5

Subject, 984 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  112 bits (280), Expect = 5e-29
 Identities = 103/366 (28%), Positives = 178/366 (48%), Gaps = 41/366 (11%)

Query: 60  RAILDAVPHPLFTIAGNGHVVEANVAAEAFFEVSA-PLLRRRPLTEFVPFGTPLLGLIDQ 118
           R  L  +P  + ++A +  ++  N A E   E+ A  ++  R  T   P+ + L   I+Q
Sbjct: 635 RQTLQELPMGVCSLAKDQEILMWNRALEELTEIPALQVVGSRLSTIAEPWRSLLSDFIEQ 694

Query: 119 VRQRGAPVNEYRVDLGTPRNGGERIVDIHVAPVNEQ--PDN--VVVMLQERTIADKMDRQ 174
             +    +++ R+      NG  R +++H A + E   P N  +V+++++ T   +++ +
Sbjct: 695 ADEH---LHKQRL----AHNGHRRCLNLHKAAIAEPLAPGNSGLVLLVEDLTETQQLEDR 747

Query: 175 LTHRGAARSVSALASMLAHEIKNPLSGIRGAAQLLEQSADDEDRA--LTRLICDEADRIV 232
           L H     S+  LA+ +AHEI NP++GI   AQ L    +D+     ++  I ++  R+ 
Sbjct: 748 LVHSERLASIGRLAAGVAHEIGNPITGIACLAQNLRDEREDDGEIVEISAQIIEQTKRVS 807

Query: 233 KLVDRMEVFSD--ERPVEREPVNIHAVLEHVRTLASSGFAR-HIRFVEEYDPSLPPVLAN 289
           ++V  +  F+   ER  +  PV++  V +    L S    R  ++F+    P       +
Sbjct: 808 RIVQSLMSFAHAGERQHQLYPVSLAQVTQDAIGLLSLNRNRTEVQFINLCHPD-HVAEGD 866

Query: 290 RDQLIQVFLNLVKNAAEAIDSDQDGEIQLTTAFRPGVRLMVPGASTRVSLPLEFCVRDNG 349
             +L QV +NL+ NA +A  S Q G I++++        +V              V D G
Sbjct: 867 PQRLAQVLINLLSNARDA--SPQGGVIRISSEVAEQTVYLV--------------VEDEG 910

Query: 350 KGVPEDLVPHLFDPFVTTKP--TGSGLGLALVAKIIGDHGGIVECDS-----QPRRTTFR 402
            G+P+D+   LF+PF TTK    G+GLGLALV  II +H G ++ DS       R T FR
Sbjct: 911 SGIPKDIQDRLFEPFFTTKDPGEGTGLGLALVYSIIEEHYGQIDIDSPADPETQRGTRFR 970

Query: 403 VLLPMY 408
           + LP +
Sbjct: 971 ITLPRH 976