Pairwise Alignments

Query, 480 a.a., DNA-binding transcriptional regulator NtrC from Xanthobacter sp. DMC5

Subject, 469 a.a., nitrogen metabolism transcriptional regulator, NtrC, Fis family (RefSeq) from Shewanella loihica PV-4

 Score =  379 bits (974), Expect = e-110
 Identities = 209/473 (44%), Positives = 300/473 (63%), Gaps = 14/473 (2%)

Query: 6   ILVADDDAAIRTVLNQALSRAGYEVRSCGNAATLWRWVSQGDGDLVITDVVMPDENAFDL 65
           + V DDD++IR V+ +AL  A     S   A +LW+ + Q    ++I+D+ MP  +   L
Sbjct: 5   VWVLDDDSSIRWVVERALKGAKISCASFAAAESLWQALEQTQPQVIISDIRMPGTDGLTL 64

Query: 66  LPRIKKARPDLPVIVMSAQNTFMTAIRASERGAYEYLPKPFDLKELISIVGRALAEPKKG 125
           L R++   P +PVI+M+A +   +A+ A + GA+EYLPKPFD+ E I +V RAL+  K+ 
Sbjct: 65  LDRLQLHYPHIPVIIMTAHSDLDSAVSAYQAGAFEYLPKPFDIDEAIGLVERALSHAKEQ 124

Query: 126 DGHHHAPEEQDNIPLVGRSPAMQEIYRLLARLMQTDLTVMIAGESGTGKELVARALHDYG 185
                +  E     ++G +PAMQE++R + RL ++ ++V+I G+SGTGKELVA ALH + 
Sbjct: 125 SPKVISQPEVKAPEIIGEAPAMQEVFRAIGRLSRSSISVLINGQSGTGKELVAGALHKHS 184

Query: 186 KRRTGPFVAINMAAIPRDLIESELFGHEKGSFTGATTRNPGRFEQAEGGTLFLDEIGDMP 245
            R+  PF+A+NMAAIP++LIESELFGHEKG+FTGA     GRFEQA+GGTLFLDEIGDMP
Sbjct: 185 PRKDKPFIALNMAAIPKELIESELFGHEKGAFTGAANVRQGRFEQADGGTLFLDEIGDMP 244

Query: 246 MEAQTRLLRVLQQGEYTTVGGRTPIKTDVRIIAATNKDLRTLIQQGLFREDLFFRLNVVP 305
           ++ QTRLLRVL  G++  +GG +P++ DVRIIAAT+++L +L+ +G FREDLF RLNV+ 
Sbjct: 245 LDVQTRLLRVLADGQFYRIGGHSPVQVDVRIIAATHQNLESLVAKGDFREDLFHRLNVIR 304

Query: 306 LRLPPLRERSEDVPDLVRHFFLQAERE-GLPAKQIDSAALDRLKRYRWPGNVRELENLVR 364
           + LPPL +R ED+P L RHF   A +E  +  K +  A  D L    WPGNVR+LEN  R
Sbjct: 305 VHLPPLSQRREDIPQLARHFLATAAKEISVEPKILTKATADTLASLPWPGNVRQLENTCR 364

Query: 365 RLAALYPQEVITPAIIEAELSEPMPNMLSE----EGPVDATLAASVERHLNTYFSGFGEN 420
            L  +   + I P  +  EL  P  +  S      G     L   +++ L+      GE+
Sbjct: 365 WLMVMASGQEILPQDLPPELLTPSNSHDSSPQAGSGGWQEALTQWIDQRLSE-----GES 419

Query: 421 LPPPGLYHRILKDVEYPLLSAALAATRGNQIKAAELLGLNRNTLRKKIRDLDI 473
                L  +I    E  LL  AL  T+G++ +AA+ LG  RNTL +K+++L++
Sbjct: 420 ----DLLTQIQPAFEKILLETALKHTKGHKQEAAKRLGWGRNTLTRKLKELEM 468