Pairwise Alignments

Query, 455 a.a., DNA-binding transcriptional regulator NtrC from Xanthobacter sp. DMC5

Subject, 446 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

 Score =  283 bits (723), Expect = 1e-80
 Identities = 177/455 (38%), Positives = 257/455 (56%), Gaps = 30/455 (6%)

Query: 4   DILIVDDEADIGELVAGILEDEGYSARTARDADGALGAI-ATRRPNLVFLDIWLQGSRLD 62
           D+ ++DDE+DI   +A   E    +A+     + AL AI A   P ++  DI L G  L 
Sbjct: 3   DVFLIDDESDIRIALAQSFELADLNAQFFASVEEALLAIKAQGLPLVIVSDICLPG--LS 60

Query: 63  GLELLNEIKSQHPDLPVVMISGHGNIETAVAAIKRGAYDFIEKPFNADRLVMVTERALET 122
           G  LL+ +  Q  +LPV++I+GHG+I  AV A+  GAYDFIEKPF  +RL+    RA+E 
Sbjct: 61  GQNLLSSVLHQDSELPVILITGHGDISMAVKAMHDGAYDFIEKPFAPERLIDTVHRAIEK 120

Query: 123 LRLKRELKELKQLTPHGRIL----IGRSSAIQQLKGTIERVGPTNSRILIVGPSGSGKEL 178
            RL  E ++LK+     + L    IG ++AIQ L+ TI +V  T + IL+ G +G+GKEL
Sbjct: 121 RRLTLENRQLKRSLKVSQTLGPRIIGETAAIQTLRDTIAQVADTQADILLFGETGTGKEL 180

Query: 179 TARLIHSVSGRAQGPFVVLNSAAMTPERLEFELFGVAEGE--GREQKR-GALEEAHGGTL 235
            AR +H  S R +  FV +N  A+    +E EL+G  +G   G + +R G  E A GGTL
Sbjct: 181 VARSLHEQSSRREQNFVAINCGAVPENLIESELYGHEKGAFTGADSRRVGKFEHAQGGTL 240

Query: 236 FLDEIADMPRETQNRVLRVLVEQTFTRVGSNDKVTVDVRIISSTGRNLEEEIAKGRFRED 295
           FLDEI  MP + Q R+LRVL E+   R+GSN+ + +D+R+I++T  +L++  A+G+FR+D
Sbjct: 241 FLDEIESMPMQAQIRLLRVLQERVIERIGSNELIPLDIRVIAATKIDLKQAAAEGKFRQD 300

Query: 296 LYHRLSVVPIRVPPLAERREDIPDLVDFFLDSISQTTGLPRRPIGEDAMAVLQSHDWPGN 355
           LY+RL++V + +PPL ERREDIP L   FL   +   G     +    +  L SHDWPGN
Sbjct: 301 LYYRLNIVTLTIPPLRERREDIPALFHHFLLVAAARYGKAATALTASDVQSLLSHDWPGN 360

Query: 356 VRQLRNNVERLLILAGGDPEATITAAMLPPDVGALVPTLPNGNGGEHLMGLPLREAREVF 415
           VR+LRN  ER ++L                  G L     +      L+G  L E    F
Sbjct: 361 VRELRNAAERYVLL------------------GKLAQFAESHEPKSKLLG--LNEQVAEF 400

Query: 416 EREYLAAQINRFGGNISRTAEFVGMERSALHRKLK 450
           E+  L   +   GG+I  T E + + R  L+ K++
Sbjct: 401 EKSLLEQTLIECGGSIKATMERLHLPRKTLYDKMQ 435