Pairwise Alignments

Query, 117 a.a., RNA-binding protein Hfq from Xanthobacter sp. DMC5

Subject, 90 a.a., host factor-I protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 75.9 bits (185), Expect = 1e-19
 Identities = 36/64 (56%), Positives = 50/64 (78%), Gaps = 1/64 (1%)

Query: 40  QNLQDTFLNHVRKNKTPLTIFLVNGVKLQGVVTWFDNFCVLLRRDGHSQLVYKHAISTIM 99
           Q+LQD FLN +R+ + P++I+LVNG+KLQG V  FD F +LL ++  SQ+VYKHAIST++
Sbjct: 5   QSLQDPFLNALRRERVPVSIYLVNGIKLQGQVESFDQFVILL-KNTVSQMVYKHAISTVV 63

Query: 100 PGHP 103
           P  P
Sbjct: 64  PARP 67