Pairwise Alignments

Query, 537 a.a., Periplasmic dipeptide transport protein from Xanthobacter sp. DMC5

Subject, 543 a.a., peptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score =  149 bits (377), Expect = 2e-40
 Identities = 143/545 (26%), Positives = 233/545 (42%), Gaps = 68/545 (12%)

Query: 13  RTLLAGAGASLLLPAAARRAGAAPAT------------GGTLVAVLDPEPAGLVAGLTIS 60
           + LL GAG ++   +    A   PA              GT VA LDP         T  
Sbjct: 8   QALLLGAGLAVATTSFTSFAANVPAGTKLAPVQELVRGNGTEVASLDPHK-------TEG 60

Query: 61  APAVAVSANIFDGLVEYDEGFKLKPSLATSWETSADGTVITFRLRNDVTWHDGTPFTSAD 120
            P   V  ++ +GLV  D    + P +A SWET+ D    TF +R D  W +G P T+ D
Sbjct: 61  VPESNVIRDLLEGLVNQDANGNVVPGVAESWETT-DNKTFTFHIRKDAKWSNGDPVTAHD 119

Query: 121 VAYSL---------------LEVTKKVHPR----GNAVFANLTAVDTPDPYTAVLRFSRP 161
             YS                +E TK  + +    G    + L A    D +T V      
Sbjct: 120 FVYSFQRAVDPATASPYSWYMEYTKMKNAKEIIAGEKDKSTLGA-KAVDDHTLVFELETA 178

Query: 162 SPVVWAAFNGTETQILPKHLYEGT-NPLTNPLNGKPIGTGAFVFKEWVKGERIVLERNPN 220
            P        T  + + K   E   +  T P N   +G GA+V  +WV  ER+ L+RNP 
Sbjct: 179 VPYFVMMMGHTTVKPIHKATVEKFGDQWTKPENF--VGNGAYVLDKWVVNERLELKRNPQ 236

Query: 221 YWDKGRPYLDRVVFRIIRDPASRAAALETGEAQYIPLNPVPLSDVARIKASKDLVVETRG 280
           YWD     L++V +  I +  +      +GE Q    N +PL    R+K      V+   
Sbjct: 237 YWDDKNTVLNKVTYLPIENQVAEMNRFLSGEIQI--TNELPLEHFKRLKKEHPESVQV-- 292

Query: 281 FEGPAPMYFFDFNLRREPFGDIRVRQAFAHALNRKALAETVFYGLAKPAAGPVPSYQTQF 340
            +G    Y++ FN ++ PF D+RVR+A ++A++R  +++ +     KPA    P   T  
Sbjct: 293 -QGQLCTYYYGFNNKKPPFDDVRVRKALSYAIDRDVVSDAILGQGQKPAYFLTPEI-TAG 350

Query: 341 FATDLPQY-----DYNIAKAEALLDAAGLKKGADGVRLRIDHIPSAYGEDYRRAGEYFKQ 395
           F+ ++P Y        IA+A+ LL+ AG  K ++ ++  + +  S   E++++     + 
Sbjct: 351 FSPEMPAYGKMTQKERIAEAKKLLEEAGYNK-SNPLKFTLLYNTS---ENHKKIATAIQS 406

Query: 396 ALK-RIGVDVTLRNYDLPTYIKVVFTEYDFD-THSAWYSAYPDPQIGVQRRYWSQAIKKG 453
             K  +GVD+ L N +  TY+     + +FD T + W   Y +    +        +   
Sbjct: 407 MWKTSLGVDIALENQEWKTYLD-TRRQGNFDVTRAGWCGDYNEASSFL-------TLMLS 458

Query: 454 TPSSNASGIADPEIDAVIERIQTEGNVEKRNADIRELQRLAQVKLPSVNLLELTFYRAYS 513
           + +SN       E DAVIE+ +T  + E+R     + ++L    +P   + +    R  S
Sbjct: 459 SNTSNDPQYHSAEYDAVIEKAKTSTSEEERQKLYADAEKLLARDMPIAPIYQYVRSRLVS 518

Query: 514 AKLSG 518
             + G
Sbjct: 519 PTVGG 523