Pairwise Alignments

Query, 537 a.a., Periplasmic dipeptide transport protein from Xanthobacter sp. DMC5

Subject, 531 a.a., oligopeptidemurein peptide ABC transporter substrate-binding protein precursor from Sinorhizobium meliloti 1021

 Score =  141 bits (356), Expect = 5e-38
 Identities = 142/552 (25%), Positives = 229/552 (41%), Gaps = 50/552 (9%)

Query: 3   SPFETLALSRRTLLAGAGASLLLPAA-ARRAGAAPATGGTLVAVLDPEPAGLVAGLTISA 61
           SPF    LS   +    G++   PA  A+  G         +  LDP+ A L    ++ +
Sbjct: 5   SPFRPRLLSAFLISIFLGSA---PATLAQERGELRIATSYKLMTLDPQYANLNENTSLLS 61

Query: 62  PAVAVSANIFDGLVEYDEGFKLKPSLATSWETSADGTVITFRLRNDVTWHDGTPFTSADV 121
                  +I++ LV  D+  +LKP LATSW   +D T   F+LR+ V +HDG+ F + DV
Sbjct: 62  -------HIYERLVYQDDNLELKPGLATSWRPLSD-TQWAFKLRDKVRFHDGSAFDADDV 113

Query: 122 AYSLLEVTKKVHPRGN---AVFANLTAVDTPDPYTAVLRFSRPSPVVWAAFNGTETQILP 178
            Y++  +   + P      +  + + +V  PDP T ++      P +   F+       P
Sbjct: 114 VYTIERIRDFLKPPSGGFRSYVSGIKSVSAPDPLTVLIETDGAVPNLPLFFSSLFVMNRP 173

Query: 179 KHLYEGTNPLTNPLNGKPIGTGAFVFKEWVKGERIVLERNPNYWDKGRPYLDRVVFRIIR 238
              +E T  L       P GTG + F+ W  GE + L RN +YW  G+P   +V FR+I 
Sbjct: 174 SKGFETTENLN--AGHPPNGTGPYRFESWSSGESLRLARNDDYWG-GKPAWSKVTFRVIE 230

Query: 239 DPASRAAALETGEAQYIPLNPVPLSDVARIKASKDLVVETRGFEGPAPMYFFDFNLRRE- 297
           +PA+R AAL TGE      + +P  DVA +K     +       G A + F  F++ R+ 
Sbjct: 231 NPAARVAALSTGEVDV--AHAIPARDVASLKQRGAKIASV----GAARVNFVQFDVARDT 284

Query: 298 --------------PFGDIRVRQAFAHALNRKALAETVFYGLAKPAAGPVPSYQTQFFAT 343
                         PF +  VR+A   A +R  L + +  G    AA   P+      A 
Sbjct: 285 LPGVTDKSGEPIANPFKNPLVRRALTLATDRGILVDKILAGYGTAAAQVFPNGLPGTSAN 344

Query: 344 DLPQYDYNIAKAEALLDAAGLKKGADGVRLRIDHIPSAYGEDYRRAGEYFKQALKRIGVD 403
            LP+   N  +A+ LL  AG     DG  L +      Y  D   + +   Q+  RIGV+
Sbjct: 345 LLPEAP-NYDEAKMLLAKAGF---PDGFNLVLAGPAGRYPGD-AESLQAVAQSWARIGVN 399

Query: 404 VTLRNYDLPTYIKVVFTEYDFDTHSAWYSAYPDPQIGV--QRRYWSQAIKKGTPSSNASG 461
                        V  T+     +  WY       + +       S   ++GT + N   
Sbjct: 400 A----QPAAAPFSVFNTKRAAGDYGVWYGGTSGEAVDIILHSLLASPDPERGTGALNFGK 455

Query: 462 IADPEIDAVIERIQTEGNVEKRNADIRELQRLAQVKLPSVNLLELTFYRAYSAKLSGIDL 521
             +   DA++   ++     +RNA + +   L     P + L        Y +++    L
Sbjct: 456 YRNEAFDAMLAGAESIAVGPERNAALAQATELVMADQPIIPLYHFHHIVGYGSRIGSYLL 515

Query: 522 APFGGYQSLKTV 533
            P G   +++T+
Sbjct: 516 HPRGWTTAMQTL 527